PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 17.1.3
Description: hormone metabolism.abscisic acid.induced-regulated-responsive-activated

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	17	CH_ath_247	3	3	0.0000138168
Brassica rapa	A02	17	CH_bra_154	3	3	0.0000135614
Brassica rapa	A06	17	CH_bra_80	4	6	0.000000131409
Capsella rubella	scaffold_6	17	CH_cru_191	3	3	0.00000713055
Citrus sinensis	scaffold00019	17	CH_csi_111	3	3	0.00000584964
Eucalyptus grandis	scaffold_10	17	CH_egr_437	4	5	0.0000000827892
Eucalyptus grandis	scaffold_11	17	CH_egr_759	3	5	0.000209066
Eucalyptus grandis	scaffold_2	17	CH_egr_806	3	6	0.000417872
Glycine max	Gm10	17	CH_gma_176	4	5	0.000000241818
Glycine max	Gm20	17	CH_gma_149	4	4	0.0000000484004
Gossypium raimondii	Chr05	17	CH_gra_59	6	6	0.0000000000000231706
Gossypium raimondii	Chr13	17	CH_gra_244	3	3	0.0000334986
Populus trichocarpa	Chr03	17	CH_ptr_174	4	4	0.0000000196144
Populus trichocarpa	Chr04	17	CH_ptr_320	3	3	0.000024526
Populus trichocarpa	Chr05	17	CH_ptr_217	4	6	0.000000293837
Ricinus communis	30131	17	CH_rco_151	3	3	0.0000081004
Solanum lycopersicum	ch04	17	CH_sly_67	5	5	0.00000000000438457
Vitis vinifera	chr3	17	CH_vvi_209	4	7	0.00000109496

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V