PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00124	17	CH_csi_108	3	3	0.00000449973
Glycine max	Gm02	17	CH_gma_268	3	3	0.00000675913
Oryza sativa ssp. japonica	3	17	CH_osa_214	3	3	0.00000256287
Oryza sativa ssp. japonica	7	17	CH_osa_122	4	6	0.0000000123947
Ricinus communis	29854	17	CH_rco_93	4	8	0.0000000983028
Solanum lycopersicum	ch01	17	CH_sly_82	5	7	0.0000000000582611
Solanum lycopersicum	ch11	17	CH_sly_65	5	5	0.00000000000277689
Vitis vinifera	chr18	17	CH_vvi_122	4	4	0.00000000132168
Zea mays	1	17	CH_zma_168	3	4	0.0000443683

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V