PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 16.8.3.1
Description: secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00269	17	CH_csi_142	3	4	0.0000457866
Eucalyptus grandis	scaffold_2	17	CH_egr_532	4	6	0.00000134851
Eucalyptus grandis	scaffold_5	17	CH_egr_46	11	12	2.27858e-27
Eucalyptus grandis	scaffold_7	17	CH_egr_82	10	16	1.47455e-21
Eucalyptus grandis	scaffold_5	18	CH_egr_44	11	12	2.27858e-27
Eucalyptus grandis	scaffold_7	18	CH_egr_74	10	16	1.47455e-21
Glycine max	Gm09	17	CH_gma_331	3	3	0.0000455973
Glycine max	Gm12	17	CH_gma_384	3	4	0.000182261
Glycine max	Gm12	17	CH_gma_330	3	3	0.0000455973
Gossypium raimondii	Chr01	17	CH_gra_270	3	4	0.000133899
Gossypium raimondii	Chr03	17	CH_gra_207	4	10	0.00000638344
Gossypium raimondii	Chr09	17	CH_gra_269	3	4	0.000133899
Malus domestica	2	17	CH_mdo_4	9	26	3.16239e-17
Malus domestica	7	17	CH_mdo_79	5	16	0.000000110587
Manihot esculenta	scaffold02801	17	CH_mes_215	3	6	0.000552713
Manihot esculenta	scaffold06659	17	CH_mes_166	3	4	0.00011072
Populus trichocarpa	Chr01	17	CH_ptr_33	9	15	5.64903e-19
Populus trichocarpa	Chr02	17	CH_ptr_45	7	7	1.055e-16
Populus trichocarpa	Chr09	17	CH_ptr_198	4	4	0.0000000793701
Prunus persica	scaffold_2	17	CH_ppe_324	3	3	0.0000510161
Prunus persica	scaffold_2	17	CH_ppe_102	6	12	0.0000000000653384
Prunus persica	scaffold_5	17	CH_ppe_325	3	3	0.0000510161
Ricinus communis	29864	17	CH_rco_86	4	4	0.0000000251584
Ricinus communis	30170	17	CH_rco_166	3	3	0.0000256175
Ricinus communis	30174	17	CH_rco_167	3	3	0.0000256175
Vitis vinifera	chr13	17	CH_vvi_338	5	32	0.000126106
Vitis vinifera	chr13_random	17	CH_vvi_131	6	14	0.00000000346074
Vitis vinifera	chr15	17	CH_vvi_350	3	3	0.000191799
Vitis vinifera	chr15	17	CH_vvi_351	3	3	0.000191799
Vitis vinifera	chr18	17	CH_vvi_352	3	3	0.000191799
Vitis vinifera	chr18	17	CH_vvi_353	3	3	0.000191799
Zea mays	10	17	CH_zma_171	3	3	0.0000502474
Zea mays	7	17	CH_zma_67	5	12	0.0000000410306
Zea mays	9	17	CH_zma_20	6	8	0.00000000000142871

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V