PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 16.10
Description: secondary metabolism.simple phenols

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A10	17	CH_bra_158	3	3	0.0000166827
Capsella rubella	scaffold_6	17	CH_cru_206	3	3	0.0000154757
Citrus sinensis	scaffold00014	17	CH_csi_79	4	7	0.000000808126
Citrus sinensis	scaffold00083	17	CH_csi_219	3	6	0.000465213
Eucalyptus grandis	scaffold_2	17	CH_egr_222	10	42	0.000000000000894479
Eucalyptus grandis	scaffold_5	17	CH_egr_183	7	7	0.0000000000000381305
Eucalyptus grandis	scaffold_6	17	CH_egr_207	7	8	0.000000000000304339
Eucalyptus grandis	scaffold_6	17	CH_egr_90	10	11	7.18649e-21
Eucalyptus grandis	scaffold_9	17	CH_egr_544	4	4	0.00000200838
Eucalyptus grandis	scaffold_2	18	CH_egr_149	10	42	0.000000000000894479
Eucalyptus grandis	scaffold_6	18	CH_egr_81	10	11	7.18649e-21
Glycine max	Gm01	17	CH_gma_432	3	4	0.000394996
Glycine max	Gm07	17	CH_gma_355	3	3	0.0000988388
Glycine max	Gm08	17	CH_gma_354	3	3	0.0000988388
Glycine max	Gm18	17	CH_gma_169	7	68	0.00000016266
Glycine max	Gm18	17	CH_gma_353	3	4	0.0000988388
Glycine max	Gm18	18	CH_gma_37	11	192	0.000000000050579
Gossypium raimondii	Chr03	17	CH_gra_345	3	4	0.00061991
Gossypium raimondii	Chr09	17	CH_gra_18	11	13	2.48983e-25
Gossypium raimondii	Chr10	17	CH_gra_176	4	5	0.00000120472
Gossypium raimondii	Chr12	17	CH_gra_104	5	6	0.00000000220896
Gossypium raimondii	Chr09	18	CH_gra_18	11	13	2.48983e-25
Malus domestica	4	17	CH_mdo_139	3	3	0.00000735075
Malus domestica	9	17	CH_mdo_186	3	5	0.0000734482
Oryza sativa ssp. japonica	1	17	CH_osa_159	6	71	0.000000168126
Oryza sativa ssp. japonica	5	17	CH_osa_297	3	4	0.0000382155
Populus trichocarpa	Chr01	17	CH_ptr_470	3	4	0.000685076
Populus trichocarpa	Chr05	17	CH_ptr_380	3	3	0.000171476
Populus trichocarpa	Chr06	17	CH_ptr_381	3	3	0.000171476
Populus trichocarpa	Chr15	17	CH_ptr_245	4	5	0.00000134822
Populus trichocarpa	Chr16	17	CH_ptr_222	7	62	0.000000437543
Populus trichocarpa	Chr19	17	CH_ptr_130	5	5	0.000000000418353
Prunus persica	scaffold_8	17	CH_ppe_442	4	22	0.000816155
Prunus persica	scaffold_8	17	CH_ppe_54	9	26	0.0000000000000011119
Ricinus communis	28644	17	CH_rco_33	5	5	0.0000000000141953
Ricinus communis	29703	17	CH_rco_120	4	8	0.00000118689
Solanum lycopersicum	ch05	17	CH_sly_104	5	7	0.00000000065233
Solanum lycopersicum	ch06	17	CH_sly_313	3	3	0.0000355245
Vitis vinifera	chr18	17	CH_vvi_65	11	55	0.00000000000000961046
Vitis vinifera	chr18_random	17	CH_vvi_49	12	55	6.58736e-17
Vitis vinifera	chr7	17	CH_vvi_201	5	11	0.000000626849
Vitis vinifera	chr8	17	CH_vvi_180	5	9	0.000000171569
Vitis vinifera	chr18	18	CH_vvi_44	11	55	0.00000000000000961046
Zea mays	3	17	CH_zma_113	5	41	0.00000232617

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V