Functional clusters
Information
- Type
- Mapman term
- Identifier
- 13.2.6.2
- Description
- amino acid metabolism.degradation.aromatic aa.tyrosine
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica rapa | A01 | 17 | CH_bra_139 | 3 | 3 | 0.00000751186 |
Brassica rapa | A03 | 17 | CH_bra_174 | 3 | 4 | 0.0000300349 |
Capsella rubella | scaffold_7 | 17 | CH_cru_192 | 3 | 4 | 0.00000768753 |
Eucalyptus grandis | scaffold_1 | 17 | CH_egr_458 | 4 | 12 | 0.00000014788 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_803 | 3 | 14 | 0.000411848 |
Glycine max | Gm06 | 17 | CH_gma_263 | 4 | 25 | 0.0000058961 |
Gossypium raimondii | Chr05 | 17 | CH_gra_174 | 3 | 3 | 0.00000094848 |
Manihot esculenta | scaffold02307 | 17 | CH_mes_256 | 2 | 2 | 0.000955201 |
Populus trichocarpa | Chr07 | 17 | CH_ptr_246 | 3 | 3 | 0.00000136401 |
Populus trichocarpa | Chr17 | 17 | CH_ptr_77 | 5 | 5 | 0.0000000000000937172 |
Vitis vinifera | chr12 | 17 | CH_vvi_174 | 4 | 8 | 0.000000125972 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |