PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 13.1.6.1.10
Description: amino acid metabolism.synthesis.aromatic aa.chorismate.dehydroquinate/shikimate dehydrogenase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_3	17	CH_cru_238	2	2	0.0000763242
Eucalyptus grandis	scaffold_8	17	CH_egr_829	2	2	0.00058627
Malus domestica	1	17	CH_mdo_309	2	3	0.000830808
Manihot esculenta	scaffold03614	17	CH_mes_90	3	4	0.00000109477
Manihot esculenta	scaffold11998	19	CH_mes_5	2	2	0.000573121
Oryza sativa ssp. japonica	1	17	CH_osa_114	3	3	0.00000000770788
Prunus persica	scaffold_6	17	CH_ppe_375	2	2	0.000216255
Ricinus communis	30128	17	CH_rco_42	4	4	0.0000000000426172
Vitis vinifera	chr14	17	CH_vvi_158	3	3	0.0000000347148

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V