Functional clusters
Information
- Type
- Mapman term
- Identifier
- 11.9.4.13
- Description
- lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_5 | 17 | CH_aly_24 | 3 | 4 | 0.0000000956694 |
Arabidopsis thaliana | 3 | 17 | CH_ath_167 | 3 | 3 | 0.000000106283 |
Capsella rubella | scaffold_15 | 17 | CH_cru_72 | 4 | 4 | 0.000000000280142 |
Capsella rubella | scaffold_5 | 17 | CH_cru_71 | 4 | 4 | 0.000000000280142 |
Citrus sinensis | scaffold00018 | 17 | CH_csi_227 | 2 | 2 | 0.000700607 |
Eucalyptus grandis | scaffold_7 | 17 | CH_egr_555 | 3 | 3 | 0.00000288727 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_156 | 6 | 8 | 0.00000000000000349329 |
Glycine max | Gm11 | 17 | CH_gma_85 | 4 | 4 | 0.0000000000757568 |
Malus domestica | 8 | 17 | CH_mdo_113 | 3 | 5 | 0.00000178936 |
Oryza sativa ssp. japonica | 4 | 17 | CH_osa_64 | 5 | 17 | 0.0000000000353421 |
Populus trichocarpa | Chr19 | 17 | CH_ptr_258 | 3 | 4 | 0.00000247277 |
Prunus persica | scaffold_6 | 17 | CH_ppe_97 | 4 | 5 | 0.0000000000280941 |
Ricinus communis | 29791 | 17 | CH_rco_246 | 2 | 2 | 0.000589188 |
Ricinus communis | 30055 | 17 | CH_rco_245 | 2 | 2 | 0.000589188 |
Solanum lycopersicum | ch11 | 17 | CH_sly_204 | 3 | 3 | 0.00000059705 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |