Functional clusters
Information
- Type
- Mapman term
- Identifier
- 11.8
- Description
- lipid metabolism.exotics(steroids, squalene etc)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica rapa | A02 | 17 | CH_bra_78 | 5 | 6 | 0.000000106496 |
Brassica rapa | A09 | 17 | CH_bra_12 | 8 | 10 | 0.0000000000000281841 |
Capsella rubella | scaffold_5 | 17 | CH_cru_164 | 4 | 4 | 0.00000210984 |
Citrus sinensis | scaffold00030 | 17 | CH_csi_182 | 5 | 28 | 0.000200336 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_95 | 10 | 11 | 2.46626e-20 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_347 | 6 | 9 | 0.00000000248619 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_491 | 6 | 17 | 0.000000358772 |
Eucalyptus grandis | scaffold_10 | 18 | CH_egr_82 | 10 | 11 | 2.46626e-20 |
Eucalyptus grandis | scaffold_3 | 18 | CH_egr_228 | 10 | 165 | 0.00000465549 |
Gossypium raimondii | Chr03 | 17 | CH_gra_119 | 5 | 5 | 0.0000000249139 |
Gossypium raimondii | Chr07 | 17 | CH_gra_77 | 7 | 8 | 0.00000000000254494 |
Gossypium raimondii | Chr09 | 17 | CH_gra_206 | 5 | 10 | 0.00000618408 |
Gossypium raimondii | Chr09 | 17 | CH_gra_160 | 5 | 7 | 0.000000520037 |
Gossypium raimondii | Chr07 | 18 | CH_gra_46 | 10 | 38 | 0.00000000000597913 |
Malus domestica | 16 | 17 | CH_mdo_174 | 4 | 8 | 0.0000341647 |
Oryza sativa ssp. japonica | 11 | 17 | CH_osa_391 | 3 | 3 | 0.000404537 |
Oryza sativa ssp. japonica | 12 | 17 | CH_osa_255 | 4 | 6 | 0.0000114922 |
Populus trichocarpa | Chr01 | 17 | CH_ptr_484 | 3 | 3 | 0.000854081 |
Populus trichocarpa | Chr03 | 17 | CH_ptr_255 | 4 | 4 | 0.00000232661 |
Populus trichocarpa | Chr11 | 17 | CH_ptr_67 | 8 | 11 | 0.0000000000000191324 |
Populus trichocarpa | Chr11 | 18 | CH_ptr_72 | 10 | 74 | 0.000000000483186 |
Prunus persica | scaffold_5 | 17 | CH_ppe_307 | 4 | 7 | 0.0000299817 |
Ricinus communis | 29738 | 17 | CH_rco_170 | 4 | 6 | 0.0000287126 |
Ricinus communis | 30138 | 17 | CH_rco_74 | 6 | 11 | 0.00000000774497 |
Solanum lycopersicum | ch04 | 17 | CH_sly_241 | 4 | 4 | 0.00000382437 |
Solanum lycopersicum | ch05 | 17 | CH_sly_94 | 6 | 7 | 0.000000000265496 |
Solanum lycopersicum | ch10 | 17 | CH_sly_242 | 4 | 4 | 0.00000382437 |
Solanum lycopersicum | ch05 | 18 | CH_sly_81 | 10 | 173 | 0.0000109033 |
Vitis vinifera | chr17 | 17 | CH_vvi_207 | 4 | 4 | 0.00000107528 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |