PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_84	3	33	0.000325479
Arabidopsis thaliana	1	17	CH_ath_83	6	34	0.00000000000190531
Brassica rapa	A03	17	CH_bra_37	4	4	0.00000000143117
Brassica rapa	A09	17	CH_bra_124	3	3	0.00000359634
Capsella rubella	scaffold_1	17	CH_cru_143	3	3	0.000000305845
Chlamydomonas reinhardtii	chromosome_4	17	CH_cre_26	4	22	0.000001127
Malus domestica	17	17	CH_mdo_28	4	4	0.0000000000973687
Populus trichocarpa	Chr11	17	CH_ptr_183	3	5	0.000000037471
Prunus persica	scaffold_3	17	CH_ppe_145	4	4	0.000000004356
Prunus persica	scaffold_4	17	CH_ppe_41	7	9	2.00367e-17
Prunus persica	scaffold_4	17	CH_ppe_68	6	9	0.000000000000099714

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V