PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 11.1.10
Description: lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00132	17	CH_csi_16	6	9	0.000000000000760579
Eucalyptus grandis	scaffold_4	17	CH_egr_620	3	3	0.0000118584
Gossypium raimondii	Chr02	17	CH_gra_223	3	3	0.0000126105
Gossypium raimondii	Chr11	17	CH_gra_222	3	3	0.0000126105
Malus domestica	1	17	CH_mdo_69	4	6	0.0000000391616
Oryza sativa ssp. japonica	6	17	CH_osa_374	4	43	0.000251567
Populus trichocarpa	Chr10	17	CH_ptr_35	8	12	5.92833e-18
Populus trichocarpa	Chr13	17	CH_ptr_466	3	6	0.000630951
Prunus persica	scaffold_1	17	CH_ppe_284	3	3	0.0000103669
Prunus persica	scaffold_2	17	CH_ppe_396	3	7	0.000362084
Prunus persica	scaffold_2	17	CH_ppe_283	3	3	0.0000103669
Ricinus communis	29844	17	CH_rco_146	3	3	0.00000526526
Solanum lycopersicum	ch06	17	CH_sly_312	3	4	0.0000352296

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V