Functional clusters
Information
- Type
- Mapman term
- Identifier
- 10.8.1
- Description
- cell wall.pectin*esterases.PME
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_6 | 17 | CH_aly_66 | 3 | 3 | 0.0000686466 |
Arabidopsis thaliana | 5 | 17 | CH_ath_325 | 3 | 3 | 0.000172758 |
Brassica rapa | A01 | 17 | CH_bra_279 | 3 | 3 | 0.000779148 |
Brassica rapa | A05 | 17 | CH_bra_280 | 3 | 3 | 0.000779148 |
Brassica rapa | A09 | 17 | CH_bra_278 | 3 | 3 | 0.000779148 |
Capsella rubella | scaffold_3 | 17 | CH_cru_301 | 3 | 3 | 0.000614311 |
Capsella rubella | scaffold_6 | 17 | CH_cru_303 | 3 | 3 | 0.000614311 |
Capsella rubella | scaffold_6 | 17 | CH_cru_302 | 3 | 3 | 0.000614311 |
Citrus sinensis | scaffold00001 | 17 | CH_csi_49 | 5 | 7 | 0.0000000127264 |
Citrus sinensis | scaffold00013 | 17 | CH_csi_90 | 4 | 5 | 0.000001575 |
Eucalyptus grandis | scaffold_17 | 17 | CH_egr_404 | 4 | 4 | 0.0000000280379 |
Eucalyptus grandis | scaffold_5 | 17 | CH_egr_176 | 6 | 6 | 0.0000000000000209647 |
Eucalyptus grandis | scaffold_6 | 17 | CH_egr_662 | 3 | 3 | 0.0000308525 |
Eucalyptus grandis | scaffold_8 | 17 | CH_egr_663 | 3 | 3 | 0.0000308525 |
Glycine max | Gm03 | 17 | CH_gma_162 | 5 | 7 | 0.0000000817042 |
Glycine max | Gm03 | 17 | CH_gma_477 | 3 | 3 | 0.000721106 |
Glycine max | Gm04 | 17 | CH_gma_476 | 3 | 3 | 0.000721106 |
Glycine max | Gm09 | 17 | CH_gma_237 | 5 | 11 | 0.00000178362 |
Glycine max | Gm13 | 17 | CH_gma_473 | 3 | 3 | 0.000721106 |
Glycine max | Gm15 | 17 | CH_gma_173 | 5 | 8 | 0.000000217456 |
Glycine max | Gm17 | 17 | CH_gma_474 | 3 | 3 | 0.000721106 |
Glycine max | Gm19 | 17 | CH_gma_475 | 3 | 3 | 0.000721106 |
Glycine max | Gm19 | 17 | CH_gma_234 | 4 | 4 | 0.00000168492 |
Gossypium raimondii | Chr06 | 17 | CH_gra_167 | 4 | 4 | 0.000000769123 |
Gossypium raimondii | Chr08 | 17 | CH_gra_55 | 7 | 7 | 0.00000000000000650376 |
Gossypium raimondii | Chr09 | 17 | CH_gra_321 | 3 | 3 | 0.000367838 |
Malus domestica | 1 | 17 | CH_mdo_93 | 5 | 13 | 0.000000331049 |
Malus domestica | 2 | 17 | CH_mdo_259 | 5 | 45 | 0.000302832 |
Manihot esculenta | scaffold06914 | 17 | CH_mes_46 | 5 | 5 | 0.00000000558153 |
Manihot esculenta | scaffold06948 | 17 | CH_mes_240 | 3 | 3 | 0.000626308 |
Manihot esculenta | scaffold07571 | 17 | CH_mes_241 | 3 | 3 | 0.000626308 |
Manihot esculenta | scaffold10114 | 17 | CH_mes_239 | 3 | 3 | 0.000626308 |
Manihot esculenta | scaffold10305 | 17 | CH_mes_97 | 4 | 4 | 0.00000188467 |
Populus trichocarpa | Chr01 | 17 | CH_ptr_237 | 4 | 4 | 0.000000957191 |
Populus trichocarpa | Chr03 | 17 | CH_ptr_388 | 4 | 10 | 0.000198916 |
Populus trichocarpa | Chr05 | 17 | CH_ptr_432 | 3 | 3 | 0.000440231 |
Populus trichocarpa | Chr06 | 17 | CH_ptr_191 | 5 | 7 | 0.0000000430492 |
Prunus persica | scaffold_2 | 17 | CH_ppe_229 | 4 | 4 | 0.00000109196 |
Prunus persica | scaffold_6 | 17 | CH_ppe_230 | 4 | 4 | 0.00000109196 |
Prunus persica | scaffold_7 | 17 | CH_ppe_214 | 6 | 23 | 0.000000611717 |
Prunus persica | scaffold_8 | 17 | CH_ppe_412 | 3 | 3 | 0.000445504 |
Ricinus communis | 29739 | 17 | CH_rco_24 | 9 | 29 | 0.000000000000434886 |
Ricinus communis | 30076 | 17 | CH_rco_138 | 4 | 5 | 0.00000383841 |
Ricinus communis | 30128 | 17 | CH_rco_115 | 4 | 4 | 0.00000076917 |
Ricinus communis | 30147 | 17 | CH_rco_114 | 4 | 4 | 0.00000076917 |
Solanum lycopersicum | ch01 | 17 | CH_sly_441 | 3 | 3 | 0.000527369 |
Solanum lycopersicum | ch01 | 17 | CH_sly_160 | 5 | 7 | 0.0000000637798 |
Solanum lycopersicum | ch07 | 17 | CH_sly_440 | 3 | 3 | 0.000527369 |
Solanum lycopersicum | ch10 | 17 | CH_sly_192 | 5 | 9 | 0.000000381152 |
Solanum lycopersicum | ch11 | 17 | CH_sly_259 | 4 | 5 | 0.00000636616 |
Vitis vinifera | chr16 | 17 | CH_vvi_191 | 4 | 4 | 0.000000304078 |
Vitis vinifera | chr6 | 17 | CH_vvi_214 | 4 | 5 | 0.0000015182 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |