PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 10.7
Description: cell wall.modification

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	17	CH_aly_45	4	6	0.00000550744
Arabidopsis thaliana	5	17	CH_ath_218	4	5	0.00000324889
Arabidopsis thaliana	5	17	CH_ath_87	6	6	0.00000000000262679
Brassica rapa	A01	17	CH_bra_245	4	10	0.000458419
Brassica rapa	A02	17	CH_bra_148	4	5	0.000011033
Brassica rapa	A03	17	CH_bra_289	3	3	0.000823243
Brassica rapa	A05	17	CH_bra_288	3	3	0.000823243
Brassica rapa	A08	17	CH_bra_287	3	3	0.000823243
Brassica rapa	A10	17	CH_bra_149	4	5	0.000011033
Capsella rubella	scaffold_4	17	CH_cru_297	3	3	0.000590061
Capsella rubella	scaffold_7	17	CH_cru_159	4	4	0.00000162142
Capsella rubella	scaffold_7	17	CH_cru_158	4	4	0.00000162142
Capsella rubella	scaffold_7	17	CH_cru_298	3	3	0.000590061
Capsella rubella	scaffold_8	17	CH_cru_91	5	5	0.00000000439375
Citrus sinensis	scaffold00048	17	CH_csi_85	4	4	0.00000119381
Citrus sinensis	scaffold00334	17	CH_csi_29	6	7	0.0000000000614677
Eucalyptus grandis	scaffold_1	17	CH_egr_815	3	3	0.000546492
Eucalyptus grandis	scaffold_11	17	CH_egr_816	3	3	0.000546492
Eucalyptus grandis	scaffold_3	17	CH_egr_105	12	31	1.58572e-19
Eucalyptus grandis	scaffold_5	17	CH_egr_147	8	9	3.93782e-16
Eucalyptus grandis	scaffold_3	18	CH_egr_89	12	31	1.58572e-19
Glycine max	Gm05	17	CH_gma_161	5	6	0.0000000765509
Glycine max	Gm13	17	CH_gma_129	5	5	0.00000001279
Glycine max	Gm17	17	CH_gma_203	5	8	0.000000710964
Glycine max	Gm17	17	CH_gma_96	6	7	0.000000000261672
Gossypium raimondii	Chr04	17	CH_gra_257	4	7	0.00006832
Gossypium raimondii	Chr04	17	CH_gra_356	3	3	0.000740246
Gossypium raimondii	Chr08	17	CH_gra_121	5	6	0.0000000308984
Malus domestica	12	17	CH_mdo_76	5	10	0.0000000641008
Oryza sativa ssp. japonica	10	17	CH_osa_185	4	4	0.000000768488
Oryza sativa ssp. japonica	2	17	CH_osa_105	6	13	0.00000000457382
Oryza sativa ssp. japonica	3	17	CH_osa_181	7	53	0.000000711959
Oryza sativa ssp. japonica	3	17	CH_osa_60	6	7	0.0000000000188379
Oryza sativa ssp. japonica	4	17	CH_osa_322	4	9	0.0000960943
Oryza sativa ssp. japonica	6	17	CH_osa_46	8	16	0.000000000000115556
Oryza sativa ssp. japonica	6	17	CH_osa_224	4	5	0.00000383659
Physcomitrella patens	scaffold_309	17	CH_ppa_39	4	10	0.000199864
Physcomitrella patens	scaffold_48	17	CH_ppa_41	4	11	0.000313484
Populus trichocarpa	Chr06	17	CH_ptr_430	3	3	0.000425556
Populus trichocarpa	Chr18	17	CH_ptr_280	4	5	0.00000456536
Prunus persica	scaffold_1	17	CH_ppe_150	5	6	0.00000000721764
Prunus persica	scaffold_1	17	CH_ppe_382	3	3	0.00028053
Prunus persica	scaffold_3	17	CH_ppe_94	6	7	0.0000000000169981
Prunus persica	scaffold_8	17	CH_ppe_383	3	3	0.00028053
Ricinus communis	30179	17	CH_rco_11	8	9	1.12481e-16
Solanum lycopersicum	ch03	17	CH_sly_99	6	9	0.00000000038656
Solanum lycopersicum	ch03	17	CH_sly_280	4	6	0.0000142514
Solanum lycopersicum	ch07	17	CH_sly_428	3	3	0.000424502
Solanum lycopersicum	ch12	17	CH_sly_429	3	3	0.000424502
Vitis vinifera	chr11	17	CH_vvi_21	14	18	5.17782e-29
Vitis vinifera	chr11	18	CH_vvi_22	14	18	5.17782e-29
Zea mays	1	17	CH_zma_160	4	5	0.0000308911
Zea mays	1	17	CH_zma_138	5	11	0.00000976214
Zea mays	10	17	CH_zma_139	5	11	0.00000976214
Zea mays	4	17	CH_zma_45	6	8	0.00000000206194
Zea mays	5	17	CH_zma_77	7	25	0.000000115392
Zea mays	5	17	CH_zma_10	9	11	1.58484e-16
Zea mays	6	17	CH_zma_102	7	34	0.00000125698
Zea mays	9	17	CH_zma_24	10	37	0.00000000000311114
Zea mays	5	18	CH_zma_14	10	38	0.00000000000420942
Zea mays	9	18	CH_zma_13	10	37	0.00000000000311114

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V