PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	17	CH_ath_271	3	4	0.0000327203
Capsella rubella	scaffold_3	17	CH_cru_185	3	3	0.00000594212
Eucalyptus grandis	scaffold_11	17	CH_egr_661	3	3	0.0000308525
Eucalyptus grandis	scaffold_6	17	CH_egr_660	3	3	0.0000308525
Eucalyptus grandis	scaffold_7	17	CH_egr_175	6	6	0.0000000000000209647
Manihot esculenta	scaffold04260	17	CH_mes_131	3	3	0.0000132625
Manihot esculenta	scaffold12455	17	CH_mes_132	3	3	0.0000132625
Oryza sativa ssp. japonica	3	17	CH_osa_333	3	5	0.000126007
Populus trichocarpa	Chr09	17	CH_ptr_186	4	4	0.0000000379364
Ricinus communis	29908	17	CH_rco_105	4	6	0.000000376775
Ricinus communis	30170	17	CH_rco_168	3	3	0.0000256175
Solanum lycopersicum	ch01	17	CH_sly_317	3	3	0.0000419726
Solanum lycopersicum	ch04	17	CH_sly_316	3	3	0.0000419726
Vitis vinifera	chr18	17	CH_vvi_76	6	6	0.000000000000133228
Vitis vinifera	chr5	17	CH_vvi_107	5	5	0.000000000109456

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V