PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_26	4	6	0.000000120231
Arabidopsis thaliana	3	17	CH_ath_141	4	7	0.0000000158202
Capsella rubella	scaffold_5	17	CH_cru_121	4	4	0.0000000365585
Eucalyptus grandis	scaffold_10	17	CH_egr_130	7	7	3.29361e-17
Oryza sativa ssp. japonica	3	17	CH_osa_228	3	6	0.00000462318
Prunus persica	scaffold_2	17	CH_ppe_226	4	6	0.000000881022
Prunus persica	scaffold_6	17	CH_ppe_152	5	9	0.00000000825409
Prunus persica	scaffold_7	17	CH_ppe_254	4	8	0.00000410379
Solanum lycopersicum	ch06	17	CH_sly_298	3	3	0.0000246781
Vitis vinifera	chr6	17	CH_vvi_159	4	4	0.000000041545

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V