PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 10.2.1
Description: cell wall.cellulose synthesis.cellulose synthase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_200	4	9	0.00000162721
Arabidopsis thaliana	4	17	CH_ath_254	3	3	0.0000174092
Brassica rapa	A04	17	CH_bra_171	3	3	0.0000264994
Capsella rubella	scaffold_4	17	CH_cru_321	3	8	0.000987285
Citrus sinensis	scaffold00070	17	CH_csi_15	7	13	0.0000000000000836081
Eucalyptus grandis	scaffold_11	17	CH_egr_504	4	5	0.000000492789
Eucalyptus grandis	scaffold_4	17	CH_egr_710	3	3	0.0000782655
Eucalyptus grandis	scaffold_5	17	CH_egr_711	3	3	0.0000782655
Eucalyptus grandis	scaffold_5	17	CH_egr_537	4	6	0.00000147687
Eucalyptus grandis	scaffold_8	17	CH_egr_275	5	5	0.000000000121475
Glycine max	Gm12	17	CH_gma_110	5	7	0.00000000265813
Gossypium raimondii	Chr06	17	CH_gra_259	3	3	0.0000699073
Gossypium raimondii	Chr06	17	CH_gra_260	3	3	0.0000699073
Gossypium raimondii	Chr07	17	CH_gra_69	6	7	0.000000000000748408
Gossypium raimondii	Chr13	17	CH_gra_258	3	3	0.0000699073
Malus domestica	15	17	CH_mdo_189	3	4	0.0000764561
Malus domestica	17	17	CH_mdo_223	3	5	0.000191033
Malus domestica	2	17	CH_mdo_158	3	3	0.0000191247
Manihot esculenta	scaffold02421	17	CH_mes_53	4	4	0.0000000126696
Manihot esculenta	scaffold03175	17	CH_mes_52	4	4	0.0000000126696
Oryza sativa ssp. japonica	9	17	CH_osa_246	3	3	0.00000866173
Physcomitrella patens	scaffold_189	17	CH_ppa_4	4	5	0.0000000660592
Populus trichocarpa	Chr03	17	CH_ptr_192	4	4	0.0000000462302
Prunus persica	scaffold_3	17	CH_ppe_305	3	3	0.0000255353
Prunus persica	scaffold_5	17	CH_ppe_235	4	8	0.00000160606
Prunus persica	scaffold_6	17	CH_ppe_165	4	4	0.0000000230106
Ricinus communis	29603	17	CH_rco_180	3	4	0.0000560306
Ricinus communis	29629	17	CH_rco_157	3	3	0.0000140166
Ricinus communis	30068	17	CH_rco_156	3	3	0.0000140166
Solanum lycopersicum	ch08	17	CH_sly_141	4	4	0.0000000206095
Vitis vinifera	chr12	17	CH_vvi_39	9	10	5.07248e-19
Vitis vinifera	chr2	17	CH_vvi_12	15	21	1.93431e-31
Vitis vinifera	chrUn	17	CH_vvi_125	5	5	0.00000000207409
Vitis vinifera	chrUn	17	CH_vvi_264	4	6	0.0000133583
Vitis vinifera	chr2	18	CH_vvi_13	15	21	1.93431e-31
Vitis vinifera	chrUn	18	CH_vvi_81	10	174	0.000000423936
Zea mays	7	17	CH_zma_238	3	5	0.000374303

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V