PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_211	3	3	0.00000241794
Beta vulgaris	0069.scaffold00241	17	CH_bvu_1	3	3	0.00000171051
Brassica rapa	A05	17	CH_bra_166	3	3	0.000022209
Capsella rubella	scaffold_1	17	CH_cru_194	3	3	0.0000116221
Chlamydomonas reinhardtii	chromosome_6	17	CH_cre_40	4	30	0.0000855105
Eucalyptus grandis	scaffold_4	17	CH_egr_363	4	4	0.00000000442248
Glycine max	Gm16	17	CH_gma_468	3	7	0.000607958
Prunus persica	scaffold_3	17	CH_ppe_304	3	4	0.0000254306
Solanum lycopersicum	ch02	17	CH_sly_25	8	10	4.13298e-19
Solanum lycopersicum	ch03	17	CH_sly_144	4	4	0.0000000234521
Zea mays	3	17	CH_zma_66	4	5	0.0000000390495

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V