PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00044	13	CH_atr_62	5	5	0.000000000000376736
Carica papaya	supercontig_152	13	CH_cpa_331	2	3	0.000291234
Citrullus lanatus	Chr1	13	CH_cla_390	2	2	0.000255341
Citrus sinensis	scaffold00007	13	CH_csi_100	3	4	0.0000000804779
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_392	2	2	0.000229639
Eucalyptus grandis	scaffold_5	13	CH_egr_6	18	23	3.37657e-55
Eucalyptus grandis	scaffold_5	14	CH_egr_8	18	23	3.37657e-55
Fragaria vesca	LG3	13	CH_fve_641	2	3	0.000538879
Glycine max	Gm07	13	CH_gma_354	3	3	0.000000747489
Glycine max	Gm09	13	CH_gma_179	5	19	0.000000000326536
Glycine max	Gm15	13	CH_gma_193	4	5	0.000000000760473
Gossypium raimondii	Chr10	13	CH_gra_52	6	6	2.05776e-18
Malus domestica	10	13	CH_mdo_512	2	3	0.00041541
Manihot esculenta	scaffold06598	13	CH_mes_21	5	5	6.0881e-16
Medicago truncatula	chr2	13	CH_mtr_8	14	17	1.85368e-47
Medicago truncatula	chr2	14	CH_mtr_10	14	17	1.85368e-47
Oryza sativa ssp. japonica	2	13	CH_osa_413	3	8	0.00000213838
Populus trichocarpa	Chr04	13	CH_ptr_15	13	16	2.08393e-41
Populus trichocarpa	Chr04	14	CH_ptr_15	13	16	2.08393e-41
Ricinus communis	29842	13	CH_rco_76	4	6	0.000000000213049
Solanum lycopersicum	ch02	13	CH_sly_198	3	3	0.0000000049378
Solanum tuberosum	chr02	13	CH_stu_355	3	3	0.00000000486191
Theobroma cacao	scaffold_6	13	CH_tca_117	4	5	0.0000000000237617
Zea mays	5	13	CH_zma_479	2	3	0.000452606

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V