Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR027496
- Description
- 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00002 | 13 | CH_atr_320 | 2 | 2 | 0.0000790358 |
Carica papaya | supercontig_44 | 13 | CH_cpa_214 | 2 | 2 | 0.0000970827 |
Citrus sinensis | scaffold00011 | 13 | CH_csi_236 | 2 | 2 | 0.000115814 |
Eucalyptus grandis | scaffold_2 | 13 | CH_egr_751 | 3 | 6 | 0.0000010239 |
Fragaria vesca | LG4 | 13 | CH_fve_415 | 2 | 2 | 0.0000598784 |
Manihot esculenta | scaffold10563 | 13 | CH_mes_380 | 2 | 4 | 0.000569422 |
Medicago truncatula | chr1 | 13 | CH_mtr_873 | 2 | 3 | 0.0000920344 |
Oryza sativa ssp. japonica | 10 | 13 | CH_osa_682 | 2 | 2 | 0.000214091 |
Populus trichocarpa | Chr08 | 13 | CH_ptr_529 | 2 | 2 | 0.000049802 |
Prunus persica | scaffold_1 | 13 | CH_ppe_507 | 2 | 2 | 0.0000720851 |
Ricinus communis | 29844 | 13 | CH_rco_387 | 2 | 4 | 0.000589131 |
Solanum tuberosum | chr09 | 13 | CH_stu_350 | 3 | 3 | 0.00000000486191 |
Theobroma cacao | scaffold_4 | 13 | CH_tca_451 | 2 | 2 | 0.000068171 |
Vitis vinifera | chr5 | 13 | CH_vvi_452 | 2 | 2 | 0.0000752106 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |