Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR027417
- Description
- P-loop containing nucleoside triphosphate hydrolase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_2 | 14 | CH_aly_47 | 10 | 26 | 0.000387916 |
Arabidopsis thaliana | 4 | 14 | CH_ath_47 | 11 | 34 | 0.000219932 |
Beta vulgaris | Bvchr2.sca017 | 14 | CH_bvu_20 | 10 | 17 | 0.00000327019 |
Capsella rubella | scaffold_8 | 13 | CH_cru_419 | 17 | 72 | 0.000117268 |
Capsella rubella | scaffold_4 | 14 | CH_cru_49 | 10 | 19 | 0.0000251258 |
Capsella rubella | scaffold_8 | 14 | CH_cru_54 | 17 | 72 | 0.000117268 |
Citrullus lanatus | Chr11 | 13 | CH_cla_241 | 15 | 62 | 0.0000464522 |
Citrullus lanatus | Chr11 | 14 | CH_cla_28 | 15 | 62 | 0.0000464522 |
Citrullus lanatus | Chr8 | 14 | CH_cla_29 | 10 | 27 | 0.000251623 |
Cucumis melo | CM3.5_scaffold00051 | 14 | CH_cme_29 | 10 | 21 | 0.00000493802 |
Eucalyptus grandis | scaffold_11 | 13 | CH_egr_900 | 18 | 57 | 0.0000132556 |
Eucalyptus grandis | scaffold_3 | 13 | CH_egr_272 | 26 | 55 | 0.0000000000000133586 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_959 | 7 | 7 | 0.0000380696 |
Eucalyptus grandis | scaffold_7 | 13 | CH_egr_554 | 17 | 34 | 0.00000000581892 |
Eucalyptus grandis | scaffold_11 | 14 | CH_egr_254 | 38 | 233 | 0.0000190346 |
Eucalyptus grandis | scaffold_11 | 14 | CH_egr_250 | 18 | 57 | 0.0000132556 |
Eucalyptus grandis | scaffold_3 | 14 | CH_egr_166 | 26 | 55 | 0.0000000000000133586 |
Eucalyptus grandis | scaffold_7 | 14 | CH_egr_213 | 17 | 34 | 0.00000000581892 |
Fragaria vesca | LG6 | 14 | CH_fve_56 | 12 | 40 | 0.000112384 |
Fragaria vesca | scf0513178 | 14 | CH_fve_53 | 10 | 21 | 0.0000113636 |
Gossypium raimondii | Chr09 | 13 | CH_gra_173 | 23 | 77 | 0.00000000121227 |
Gossypium raimondii | Chr07 | 14 | CH_gra_77 | 12 | 38 | 0.000837441 |
Medicago truncatula | chr7 | 13 | CH_mtr_635 | 16 | 57 | 0.00000262032 |
Medicago truncatula | chr7 | 13 | CH_mtr_447 | 16 | 46 | 0.0000000636968 |
Medicago truncatula | chr7 | 14 | CH_mtr_144 | 16 | 46 | 0.0000000636968 |
Medicago truncatula | chr7 | 14 | CH_mtr_145 | 37 | 277 | 0.0000000820675 |
Medicago truncatula | chr8 | 14 | CH_mtr_136 | 40 | 283 | 0.00000000154881 |
Oryza sativa ssp. japonica | 10 | 13 | CH_osa_110 | 18 | 41 | 0.000000000000341234 |
Oryza sativa ssp. japonica | 1 | 14 | CH_osa_111 | 11 | 26 | 0.00000162956 |
Oryza sativa ssp. japonica | 10 | 14 | CH_osa_71 | 18 | 41 | 0.000000000000341234 |
Oryza sativa ssp. japonica | 7 | 14 | CH_osa_96 | 10 | 15 | 0.0000000302644 |
Ostreococcus lucimarinus | Chr_2 | 13 | CH_olu_8 | 10 | 16 | 0.0000278793 |
Ostreococcus lucimarinus | Chr_2 | 14 | CH_olu_1 | 10 | 16 | 0.0000278793 |
Prunus persica | scaffold_2 | 13 | CH_ppe_312 | 21 | 73 | 0.000000160845 |
Prunus persica | scaffold_2 | 14 | CH_ppe_91 | 21 | 73 | 0.000000160845 |
Prunus persica | scaffold_3 | 14 | CH_ppe_124 | 33 | 248 | 0.000873411 |
Prunus persica | scaffold_5 | 14 | CH_ppe_107 | 12 | 28 | 0.0000305034 |
Solanum lycopersicum | ch08 | 13 | CH_sly_353 | 19 | 75 | 0.00000269698 |
Solanum lycopersicum | ch11 | 13 | CH_sly_719 | 11 | 31 | 0.000546329 |
Solanum lycopersicum | ch06 | 14 | CH_sly_76 | 11 | 32 | 0.000802453 |
Solanum lycopersicum | ch06 | 14 | CH_sly_70 | 31 | 226 | 0.0000760673 |
Solanum lycopersicum | ch08 | 14 | CH_sly_63 | 19 | 75 | 0.00000269698 |
Solanum lycopersicum | ch11 | 14 | CH_sly_74 | 11 | 31 | 0.000546329 |
Solanum tuberosum | chr08 | 13 | CH_stu_1073 | 18 | 76 | 0.000577272 |
Solanum tuberosum | chr11 | 13 | CH_stu_539 | 18 | 55 | 0.00000175071 |
Solanum tuberosum | chr03 | 14 | CH_stu_134 | 10 | 15 | 0.00000575759 |
Solanum tuberosum | chr05 | 14 | CH_stu_128 | 10 | 12 | 0.000000144693 |
Solanum tuberosum | chr08 | 14 | CH_stu_153 | 21 | 101 | 0.000459525 |
Theobroma cacao | scaffold_2 | 14 | CH_tca_68 | 12 | 37 | 0.000159175 |
Theobroma cacao | scaffold_3 | 14 | CH_tca_69 | 10 | 24 | 0.000181289 |
Theobroma cacao | scaffold_7 | 14 | CH_tca_66 | 12 | 34 | 0.0000768369 |
Vitis vinifera | chr13 | 13 | CH_vvi_389 | 20 | 79 | 0.00000787937 |
Vitis vinifera | chr9 | 13 | CH_vvi_94 | 25 | 56 | 0.0000000000000104998 |
Vitis vinifera | chr7 | 14 | CH_vvi_71 | 10 | 13 | 0.000000269255 |
Vitis vinifera | chr9 | 14 | CH_vvi_48 | 49 | 220 | 4.40114e-16 |
Zea mays | 10 | 13 | CH_zma_220 | 9 | 15 | 0.00000366199 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |