PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00044	13	CH_atr_367	3	8	0.000115266
Carica papaya	supercontig_4	13	CH_cpa_79	4	7	0.0000000475132
Carica papaya	supercontig_50	13	CH_cpa_168	3	4	0.000012437
Citrullus lanatus	Chr3	13	CH_cla_7	12	21	3.4273e-29
Citrullus lanatus	Chr3	14	CH_cla_7	12	21	3.4273e-29
Citrus sinensis	scaffold00057	13	CH_csi_96	4	6	0.0000000499424
Citrus sinensis	scaffold00173	13	CH_csi_169	3	3	0.00000575451
Cucumis melo	CM3.5_scaffold00017	13	CH_cme_226	3	3	0.0000202154
Cucumis melo	CM3.5_scaffold00025	13	CH_cme_104	5	9	0.00000000171946
Cucumis melo	CM3.5_scaffold00059	13	CH_cme_48	7	13	0.0000000000000130246
Cucumis melo	CM3.5_scaffold00060	13	CH_cme_128	4	4	0.0000000170229
Eucalyptus grandis	scaffold_1	13	CH_egr_478	5	13	0.000000000490239
Fragaria vesca	LG3	13	CH_fve_327	3	5	0.00000645155
Gossypium raimondii	Chr07	13	CH_gra_354	4	21	0.0000131861
Manihot esculenta	scaffold03542	13	CH_mes_41	5	6	0.000000000015948
Manihot esculenta	scaffold12794	13	CH_mes_189	3	3	0.00000756743
Medicago truncatula	chr1	13	CH_mtr_360	4	6	0.00000000629288
Oryza sativa ssp. japonica	1	13	CH_osa_223	4	6	0.00000000278969
Populus trichocarpa	Chr01	13	CH_ptr_424	3	4	0.00000327337
Solanum lycopersicum	ch01	13	CH_sly_327	3	3	0.00000108632
Thellungiella parvula	ch4-6	13	CH_tpa_146	3	3	0.00000208415
Vitis vinifera	chr6	13	CH_vvi_255	4	10	0.000000132467
Zea mays	1	13	CH_zma_232	3	3	0.00000504599
Zea mays	3	13	CH_zma_215	4	15	0.00000310517
Zea mays	5	13	CH_zma_233	3	3	0.00000504599

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V