PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_176	13	CH_cpa_365	2	2	0.000291248
Carica papaya	supercontig_176	15	CH_cpa_17	2	2	0.000291248
Citrullus lanatus	Chr9	13	CH_cla_450	2	2	0.000510682
Citrullus lanatus	Chr9	15	CH_cla_13	2	2	0.000510682
Citrus sinensis	scaffold00114	13	CH_csi_259	2	2	0.000115814
Citrus sinensis	scaffold00114	15	CH_csi_7	2	2	0.000115814
Lotus japonicus	chr4	13	CH_lja_254	2	4	0.000403334
Lotus japonicus	chr4	15	CH_lja_9	2	4	0.000403334
Oryza sativa ssp. japonica	11	13	CH_osa_436	3	6	0.00000458203
Ostreococcus lucimarinus	Chr_2	13	CH_olu_100	2	2	0.000768738
Populus trichocarpa	Chr17	13	CH_ptr_779	2	2	0.000747031
Populus trichocarpa	Chr17	15	CH_ptr_19	2	2	0.000747031
Zea mays	5	13	CH_zma_503	2	2	0.000502917
Zea mays	5	15	CH_zma_16	2	2	0.000502917

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V