Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR026847
- Description
- Vacuolar protein sorting-associated protein 13
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00089 | 13 | CH_atr_72 | 5 | 13 | 0.00000000000464411 |
Carica papaya | supercontig_119 | 13 | CH_cpa_169 | 3 | 3 | 0.0000137 |
Carica papaya | supercontig_146 | 13 | CH_cpa_50 | 5 | 8 | 0.000000000433158 |
Carica papaya | supercontig_98 | 13 | CH_cpa_4 | 11 | 16 | 9.5729e-28 |
Carica papaya | supercontig_98 | 14 | CH_cpa_4 | 11 | 16 | 9.5729e-28 |
Citrullus lanatus | Chr3 | 13 | CH_cla_233 | 3 | 6 | 0.0000358289 |
Citrullus lanatus | Chr9 | 13 | CH_cla_58 | 5 | 6 | 0.00000000000109107 |
Citrullus lanatus | Chr9 | 15 | CH_cla_3 | 3 | 6 | 0.0000021727 |
Cucumis melo | CM3.5_scaffold00006 | 13 | CH_cme_68 | 5 | 5 | 0.00000000000524082 |
Cucumis melo | CM3.5_scaffold00012 | 13 | CH_cme_57 | 6 | 10 | 0.000000000000269195 |
Cucumis melo | CM3.5_scaffold01596 | 13 | CH_cme_21 | 9 | 14 | 9.81987e-22 |
Glycine max | Gm13 | 13 | CH_gma_710 | 2 | 2 | 0.00037 |
Lotus japonicus | chr2 | 13 | CH_lja_60 | 3 | 3 | 0.0000000271176 |
Malus domestica | 15 | 13 | CH_mdo_51 | 4 | 4 | 0.000000000295352 |
Manihot esculenta | scaffold00708 | 13 | CH_mes_110 | 3 | 3 | 0.000000135133 |
Manihot esculenta | scaffold00952 | 13 | CH_mes_453 | 2 | 2 | 0.000949127 |
Oryza sativa ssp. japonica | 8 | 13 | CH_osa_708 | 2 | 2 | 0.000214091 |
Populus trichocarpa | Chr01 | 13 | CH_ptr_778 | 2 | 2 | 0.000747031 |
Prunus persica | scaffold_3 | 13 | CH_ppe_311 | 3 | 3 | 0.000000155893 |
Solanum lycopersicum | ch11 | 13 | CH_sly_277 | 3 | 4 | 0.000000197498 |
Solanum tuberosum | chr11 | 13 | CH_stu_170 | 5 | 5 | 0.000000000000036407 |
Thellungiella parvula | ch7-4 | 13 | CH_tpa_346 | 2 | 2 | 0.000794691 |
Vitis vinifera | chr15 | 13 | CH_vvi_330 | 3 | 4 | 0.00000118776 |
Zea mays | 6 | 13 | CH_zma_32 | 5 | 5 | 0.0000000000000380047 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |