PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR025846
Description: PMR5 N-terminal domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00023	13	CH_atr_376	3	4	0.000168332
Beta vulgaris	Bvchr2_un.sca001	13	CH_bvu_430	3	5	0.000566712
Carica papaya	supercontig_179	13	CH_cpa_202	3	3	0.0000701257
Carica papaya	supercontig_51	13	CH_cpa_203	3	3	0.0000701257
Eucalyptus grandis	scaffold_1	13	CH_egr_733	4	5	0.000000688295
Eucalyptus grandis	scaffold_11	13	CH_egr_661	4	4	0.000000137811
Eucalyptus grandis	scaffold_9	13	CH_egr_916	4	9	0.0000172685
Fragaria vesca	LG3	13	CH_fve_403	3	3	0.0000531376
Glycine max	Gm01	13	CH_gma_151	6	7	0.0000000000359307
Glycine max	Gm13	13	CH_gma_736	3	3	0.000548123
Glycine max	Gm19	13	CH_gma_123	6	6	0.00000000000514219
Gossypium raimondii	Chr12	13	CH_gra_298	4	5	0.00000221984
Manihot esculenta	scaffold10689	13	CH_mes_115	4	4	0.000000189365
Oryza sativa ssp. japonica	3	13	CH_osa_721	3	4	0.000274719
Oryza sativa ssp. japonica	3	13	CH_osa_722	3	4	0.000274719
Oryza sativa ssp. japonica	6	13	CH_osa_158	6	11	0.0000000000332476
Populus trichocarpa	Chr04	13	CH_ptr_578	3	3	0.000133899
Populus trichocarpa	Chr08	13	CH_ptr_329	4	4	0.000000193395
Prunus persica	scaffold_8	13	CH_ppe_557	3	3	0.000096194
Solanum lycopersicum	ch01	13	CH_sly_641	3	3	0.000258711
Solanum lycopersicum	ch02	13	CH_sly_176	5	5	0.000000000913493
Solanum lycopersicum	ch05	13	CH_sly_638	4	12	0.000239546
Solanum tuberosum	chr02	13	CH_stu_311	5	5	0.000000000885629
Solanum tuberosum	chr02	13	CH_stu_938	3	3	0.000254735
Solanum tuberosum	chr05	13	CH_stu_939	3	3	0.000254735
Theobroma cacao	scaffold_1	13	CH_tca_250	4	4	0.000000184953
Theobroma cacao	scaffold_10r	13	CH_tca_492	3	3	0.000120573
Theobroma cacao	scaffold_7	13	CH_tca_251	4	4	0.000000184953
Zea mays	6	13	CH_zma_361	3	3	0.000111012
Zea mays	9	13	CH_zma_362	3	3	0.000111012

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V