Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR025846
- Description
- PMR5 N-terminal domain
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00023 | 13 | CH_atr_376 | 3 | 4 | 0.000168332 |
Beta vulgaris | Bvchr2_un.sca001 | 13 | CH_bvu_430 | 3 | 5 | 0.000566712 |
Carica papaya | supercontig_179 | 13 | CH_cpa_202 | 3 | 3 | 0.0000701257 |
Carica papaya | supercontig_51 | 13 | CH_cpa_203 | 3 | 3 | 0.0000701257 |
Eucalyptus grandis | scaffold_1 | 13 | CH_egr_733 | 4 | 5 | 0.000000688295 |
Eucalyptus grandis | scaffold_11 | 13 | CH_egr_661 | 4 | 4 | 0.000000137811 |
Eucalyptus grandis | scaffold_9 | 13 | CH_egr_916 | 4 | 9 | 0.0000172685 |
Fragaria vesca | LG3 | 13 | CH_fve_403 | 3 | 3 | 0.0000531376 |
Glycine max | Gm01 | 13 | CH_gma_151 | 6 | 7 | 0.0000000000359307 |
Glycine max | Gm13 | 13 | CH_gma_736 | 3 | 3 | 0.000548123 |
Glycine max | Gm19 | 13 | CH_gma_123 | 6 | 6 | 0.00000000000514219 |
Gossypium raimondii | Chr12 | 13 | CH_gra_298 | 4 | 5 | 0.00000221984 |
Manihot esculenta | scaffold10689 | 13 | CH_mes_115 | 4 | 4 | 0.000000189365 |
Oryza sativa ssp. japonica | 3 | 13 | CH_osa_721 | 3 | 4 | 0.000274719 |
Oryza sativa ssp. japonica | 3 | 13 | CH_osa_722 | 3 | 4 | 0.000274719 |
Oryza sativa ssp. japonica | 6 | 13 | CH_osa_158 | 6 | 11 | 0.0000000000332476 |
Populus trichocarpa | Chr04 | 13 | CH_ptr_578 | 3 | 3 | 0.000133899 |
Populus trichocarpa | Chr08 | 13 | CH_ptr_329 | 4 | 4 | 0.000000193395 |
Prunus persica | scaffold_8 | 13 | CH_ppe_557 | 3 | 3 | 0.000096194 |
Solanum lycopersicum | ch01 | 13 | CH_sly_641 | 3 | 3 | 0.000258711 |
Solanum lycopersicum | ch02 | 13 | CH_sly_176 | 5 | 5 | 0.000000000913493 |
Solanum lycopersicum | ch05 | 13 | CH_sly_638 | 4 | 12 | 0.000239546 |
Solanum tuberosum | chr02 | 13 | CH_stu_311 | 5 | 5 | 0.000000000885629 |
Solanum tuberosum | chr02 | 13 | CH_stu_938 | 3 | 3 | 0.000254735 |
Solanum tuberosum | chr05 | 13 | CH_stu_939 | 3 | 3 | 0.000254735 |
Theobroma cacao | scaffold_1 | 13 | CH_tca_250 | 4 | 4 | 0.000000184953 |
Theobroma cacao | scaffold_10r | 13 | CH_tca_492 | 3 | 3 | 0.000120573 |
Theobroma cacao | scaffold_7 | 13 | CH_tca_251 | 4 | 4 | 0.000000184953 |
Zea mays | 6 | 13 | CH_zma_361 | 3 | 3 | 0.000111012 |
Zea mays | 9 | 13 | CH_zma_362 | 3 | 3 | 0.000111012 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |