PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR021109
Description: Aspartic peptidase domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00025	13	CH_atr_452	4	10	0.000372942
Amborella trichopoda	scaffold00057	13	CH_atr_14	15	19	2.6035e-31
Amborella trichopoda	scaffold00095	13	CH_atr_20	15	30	1.01626e-26
Amborella trichopoda	scaffold00057	14	CH_atr_14	15	19	2.6035e-31
Amborella trichopoda	scaffold00095	14	CH_atr_20	15	30	1.01626e-26
Amborella trichopoda	scaffold00057	15	CH_atr_2	7	11	0.000000000000241603
Arabidopsis thaliana	5	13	CH_ath_479	3	3	0.000316936
Brassica rapa	A02	13	CH_bra_499	3	3	0.000864793
Brassica rapa	A10	13	CH_bra_93	5	5	0.00000000638363
Fragaria vesca	LG4	13	CH_fve_207	6	12	0.0000000319001
Fragaria vesca	LG7	13	CH_fve_304	5	10	0.00000280197
Fragaria vesca	scf0513168	14	CH_fve_61	10	246	0.000292021
Malus domestica	16	13	CH_mdo_588	3	6	0.000732261
Oryza sativa ssp. japonica	4	13	CH_osa_532	11	32	0.0000331726
Oryza sativa ssp. japonica	5	13	CH_osa_536	13	49	0.0000349758
Oryza sativa ssp. japonica	8	13	CH_osa_208	20	77	0.00000000136645
Oryza sativa ssp. japonica	8	14	CH_osa_78	31	171	0.00000000000753391
Oryza sativa ssp. japonica	10	15	CH_osa_18	13	42	0.00000219381
Oryza sativa ssp. japonica	4	15	CH_osa_28	11	32	0.000019544
Oryza sativa ssp. japonica	5	15	CH_osa_31	9	19	0.0000263496
Oryza sativa ssp. japonica	8	15	CH_osa_49	15	79	0.000133753
Oryza sativa ssp. japonica	10	16	CH_osa_21	13	42	0.00000219381
Oryza sativa ssp. japonica	11	16	CH_osa_25	31	292	0.00000477467
Oryza sativa ssp. japonica	4	16	CH_osa_23	27	223	0.00000397346
Prunus persica	scaffold_6	13	CH_ppe_443	4	4	0.0000119891
Solanum lycopersicum	ch01	13	CH_sly_113	8	13	0.000000000000520095
Solanum lycopersicum	ch01	13	CH_sly_14	13	13	1.0663e-28
Solanum lycopersicum	ch01	14	CH_sly_15	13	13	1.0663e-28
Solanum lycopersicum	ch01	15	CH_sly_2	7	12	0.00000000000639254
Solanum tuberosum	chr01	13	CH_stu_38	14	17	6.63871e-29
Solanum tuberosum	chr01	14	CH_stu_38	14	17	6.63871e-29

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V