PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Malus domestica	5	13	CH_mdo_327	4	57	0.0000571723
Oryza sativa ssp. japonica	10	13	CH_osa_513	3	6	0.0000259576
Oryza sativa ssp. japonica	3	13	CH_osa_394	3	3	0.00000129868
Physcomitrella patens	scaffold_103	13	CH_ppa_152	2	2	0.000661113
Solanum lycopersicum	ch08	13	CH_sly_433	3	5	0.0000179641
Solanum tuberosum	chr03	13	CH_stu_137	6	8	0.00000000000000188544
Vitis vinifera	chr10	13	CH_vvi_168	4	4	0.000000000631848
Zea mays	1	13	CH_zma_342	3	4	0.0000752294
Zea mays	5	13	CH_zma_343	3	4	0.0000752294

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V