PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_345	3	4	0.0000272554
Arabidopsis thaliana	1	13	CH_ath_341	3	4	0.0000376275
Beta vulgaris	Bvchr1.sca001	13	CH_bvu_198	3	3	0.00000167845
Beta vulgaris	Bvchr6.sca002	13	CH_bvu_199	3	3	0.00000167845
Capsella rubella	scaffold_1	13	CH_cru_308	3	3	0.00000996179
Carica papaya	supercontig_177	13	CH_cpa_152	3	3	0.00000514632
Fragaria vesca	LG5	13	CH_fve_141	5	10	0.000000000638487
Glycine max	Gm05	13	CH_gma_435	3	3	0.00000600661
Medicago truncatula	chr3	13	CH_mtr_646	3	3	0.00000285746
Populus trichocarpa	Chr13	13	CH_ptr_108	6	8	0.000000000000014394

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V