PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR018247
Description: EF-Hand 1, calcium-binding site

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00126	13	CH_atr_500	3	3	0.000632733
Arabidopsis thaliana	4	13	CH_ath_209	5	6	0.00000034436
Citrullus lanatus	Chr8	13	CH_cla_37	9	10	6.40713e-16
Citrullus lanatus	Chr8	14	CH_cla_25	10	116	0.000016157
Citrus sinensis	scaffold00002	13	CH_csi_209	4	4	0.0000322235
Citrus sinensis	scaffold00046	13	CH_csi_24	10	14	0.00000000000000194247
Citrus sinensis	scaffold00046	14	CH_csi_15	10	14	0.00000000000000194247
Cucumis melo	CM3.5_scaffold00014	13	CH_cme_41	10	15	3.62976e-16
Cucumis melo	CM3.5_scaffold00014	14	CH_cme_23	10	15	3.62976e-16
Eucalyptus grandis	scaffold_11	13	CH_egr_1147	4	6	0.000278408
Eucalyptus grandis	scaffold_2	13	CH_egr_724	5	6	0.000000532304
Eucalyptus grandis	scaffold_8	13	CH_egr_918	4	4	0.0000187039
Fragaria vesca	LG2	13	CH_fve_397	4	5	0.0000492088
Gossypium raimondii	Chr05	13	CH_gra_255	5	5	0.000000349777
Gossypium raimondii	Chr10	13	CH_gra_54	10	10	2.93426e-18
Gossypium raimondii	Chr10	14	CH_gra_43	10	10	2.93426e-18
Manihot esculenta	scaffold02915	13	CH_mes_146	5	6	0.000000961677
Medicago truncatula	chr1	13	CH_mtr_190	8	13	0.000000000000312519
Medicago truncatula	chr3	13	CH_mtr_386	6	11	0.0000000148
Medicago truncatula	chr7	13	CH_mtr_669	4	4	0.00000418206
Oryza sativa ssp. japonica	3	13	CH_osa_728	6	48	0.000306395
Oryza sativa ssp. japonica	9	13	CH_osa_497	5	14	0.0000195564
Populus trichocarpa	Chr02	13	CH_ptr_457	5	8	0.0000097609
Populus trichocarpa	Chr14	13	CH_ptr_302	6	9	0.0000000772753
Populus trichocarpa	Chr19	13	CH_ptr_135	10	23	0.000000000000743574
Populus trichocarpa	Chr19	14	CH_ptr_80	10	23	0.000000000000743574
Ricinus communis	30170	13	CH_rco_41	9	14	0.0000000000000603785
Solanum tuberosum	chr11	13	CH_stu_667	4	4	0.000015691
Solanum tuberosum	chr12	13	CH_stu_668	4	4	0.000015691
Vitis vinifera	chr1	13	CH_vvi_99	8	9	0.0000000000000211798
Vitis vinifera	chr1	14	CH_vvi_54	12	52	0.0000000000000978378
Zea mays	1	13	CH_zma_60	11	53	0.0000000000668552
Zea mays	1	14	CH_zma_19	11	53	0.0000000000668552

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V