PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr5.sca020	13	CH_bvu_419	3	3	0.000309115
Citrullus lanatus	Chr9	13	CH_cla_397	3	3	0.000391102
Cucumis melo	CM3.5_scaffold01596	13	CH_cme_395	3	3	0.000257176
Manihot esculenta	scaffold03735	13	CH_mes_417	3	3	0.000618367
Medicago truncatula	chr8	13	CH_mtr_559	4	5	0.000000719924
Medicago truncatula	chr8	15	CH_mtr_20	3	4	0.000350942
Solanum tuberosum	chr12	15	CH_stu_23	3	4	0.000848325
Zea mays	8	13	CH_zma_466	3	3	0.000361505
Zea mays	8	15	CH_zma_12	3	3	0.000311713

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V