Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR018040
- Description
- Pectinesterase, active site
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_6 | 13 | CH_aly_549 | 3 | 4 | 0.000497524 |
Brassica rapa | A01 | 13 | CH_bra_383 | 3 | 3 | 0.000292082 |
Capsella rubella | scaffold_6 | 13 | CH_cru_460 | 3 | 3 | 0.000229252 |
Citrullus lanatus | Chr1 | 13 | CH_cla_330 | 3 | 3 | 0.000134109 |
Citrullus lanatus | Chr2 | 13 | CH_cla_452 | 3 | 4 | 0.000535729 |
Citrus sinensis | scaffold00013 | 13 | CH_csi_141 | 4 | 5 | 0.000000836924 |
Cucumis melo | CM3.5_scaffold00005 | 13 | CH_cme_315 | 3 | 3 | 0.000116406 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_879 | 3 | 3 | 0.00000906866 |
Fragaria vesca | LG1 | 13 | CH_fve_261 | 6 | 38 | 0.000000496064 |
Fragaria vesca | LG5 | 13 | CH_fve_463 | 3 | 3 | 0.0000872092 |
Glycine max | Gm09 | 13 | CH_gma_342 | 5 | 11 | 0.00000050983 |
Glycine max | Gm15 | 13 | CH_gma_277 | 5 | 8 | 0.0000000620762 |
Glycine max | Gm19 | 13 | CH_gma_685 | 3 | 3 | 0.000342223 |
Gossypium raimondii | Chr09 | 13 | CH_gra_496 | 3 | 3 | 0.000195947 |
Lotus japonicus | chr1 | 13 | CH_lja_241 | 5 | 65 | 0.000205422 |
Manihot esculenta | scaffold10114 | 13 | CH_mes_368 | 3 | 3 | 0.000354521 |
Manihot esculenta | scaffold10305 | 13 | CH_mes_141 | 4 | 4 | 0.000000874944 |
Medicago truncatula | chr1 | 13 | CH_mtr_325 | 5 | 6 | 0.00000000122946 |
Medicago truncatula | chr2 | 13 | CH_mtr_1145 | 3 | 4 | 0.000537573 |
Medicago truncatula | chr4 | 13 | CH_mtr_682 | 4 | 7 | 0.00000583259 |
Medicago truncatula | chr7 | 13 | CH_mtr_299 | 6 | 13 | 0.000000000423467 |
Medicago truncatula | chr7 | 14 | CH_mtr_128 | 10 | 145 | 0.000000000337315 |
Physcomitrella patens | scaffold_236 | 13 | CH_ppa_162 | 3 | 7 | 0.000929032 |
Populus trichocarpa | Chr03 | 13 | CH_ptr_551 | 4 | 10 | 0.0000667481 |
Prunus persica | scaffold_1 | 13 | CH_ppe_762 | 3 | 4 | 0.000960584 |
Prunus persica | scaffold_6 | 13 | CH_ppe_340 | 4 | 4 | 0.000000476811 |
Prunus persica | scaffold_7 | 13 | CH_ppe_313 | 6 | 23 | 0.000000174065 |
Ricinus communis | 30147 | 13 | CH_rco_172 | 4 | 4 | 0.000000385689 |
Solanum lycopersicum | ch01 | 13 | CH_sly_546 | 3 | 3 | 0.0000800665 |
Solanum lycopersicum | ch02 | 13 | CH_sly_545 | 3 | 3 | 0.0000800665 |
Solanum lycopersicum | ch07 | 13 | CH_sly_544 | 3 | 3 | 0.0000800665 |
Solanum tuberosum | chr01 | 13 | CH_stu_822 | 3 | 3 | 0.0000895759 |
Solanum tuberosum | chr07 | 13 | CH_stu_823 | 3 | 3 | 0.0000895759 |
Thellungiella parvula | ch6-1 | 13 | CH_tpa_237 | 3 | 3 | 0.000153611 |
Vitis vinifera | chr11 | 13 | CH_vvi_652 | 4 | 19 | 0.000659242 |
Vitis vinifera | chr16 | 13 | CH_vvi_269 | 4 | 4 | 0.000000173281 |
Vitis vinifera | chr6 | 13 | CH_vvi_316 | 4 | 5 | 0.000000865328 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |