PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR017972
Description: Cytochrome P450, conserved site

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	13	CH_aly_366	4	4	0.0000572089
Arabidopsis thaliana	1	13	CH_ath_203	6	9	0.000000240326
Arabidopsis thaliana	1	13	CH_ath_588	4	6	0.000993687
Arabidopsis thaliana	2	13	CH_ath_332	5	8	0.000024367
Arabidopsis thaliana	3	13	CH_ath_480	4	5	0.000332999
Arabidopsis thaliana	3	13	CH_ath_139	7	10	0.00000000224753
Arabidopsis thaliana	3	13	CH_ath_398	4	4	0.0000669557
Arabidopsis thaliana	3	13	CH_ath_163	6	7	0.000000020255
Arabidopsis thaliana	3	13	CH_ath_13	17	28	4.31735e-26
Arabidopsis thaliana	4	13	CH_ath_399	4	4	0.0000669557
Arabidopsis thaliana	4	13	CH_ath_70	9	14	0.00000000000156708
Arabidopsis thaliana	5	13	CH_ath_237	8	32	0.00000113643
Arabidopsis thaliana	3	14	CH_ath_40	11	106	0.00000530828
Arabidopsis thaliana	3	14	CH_ath_11	17	28	4.31735e-26
Arabidopsis thaliana	4	14	CH_ath_44	11	134	0.0000665299
Brassica rapa	A01	13	CH_bra_72	7	8	0.000000000378043
Brassica rapa	A02	13	CH_bra_173	5	5	0.000000890606
Brassica rapa	A06	13	CH_bra_16	10	12	0.00000000000000117855
Brassica rapa	A06	13	CH_bra_94	6	6	0.00000000651917
Brassica rapa	A08	13	CH_bra_461	4	5	0.000602727
Brassica rapa	A06	14	CH_bra_11	10	12	0.00000000000000117855
Carica papaya	supercontig_21	13	CH_cpa_182	5	11	0.0000250395
Citrullus lanatus	Chr1	13	CH_cla_104	6	6	0.00000000238634
Citrullus lanatus	Chr10	13	CH_cla_394	4	5	0.000260738
Citrullus lanatus	Chr2	13	CH_cla_392	4	5	0.000260738
Citrullus lanatus	Chr2	13	CH_cla_393	4	5	0.000260738
Citrullus lanatus	Chr5	13	CH_cla_227	5	8	0.0000195364
Citrullus lanatus	Chr6	13	CH_cla_466	4	6	0.000777948
Citrus sinensis	scaffold00031	13	CH_csi_176	5	7	0.00000833241
Citrus sinensis	scaffold00049	13	CH_csi_73	6	6	0.0000000029316
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_143	6	9	0.0000000998249
Cucumis melo	CM3.5_scaffold00029	13	CH_cme_209	5	8	0.000011293
Cucumis melo	CM3.5_scaffold00029	13	CH_cme_232	4	4	0.0000344993
Cucumis melo	CM3.5_scaffold00052	13	CH_cme_451	4	6	0.000512549
Cucumis melo	CM3.5_scaffold00029	14	CH_cme_28	11	119	0.00000465924
Eucalyptus grandis	scaffold_1	13	CH_egr_873	5	5	0.00000885904
Eucalyptus grandis	scaffold_11	13	CH_egr_1282	4	4	0.000735989
Eucalyptus grandis	scaffold_2	13	CH_egr_611	7	9	0.0000000449195
Eucalyptus grandis	scaffold_3	13	CH_egr_1281	4	4	0.000735989
Eucalyptus grandis	scaffold_4	13	CH_egr_567	7	8	0.0000000100879
Eucalyptus grandis	scaffold_6	13	CH_egr_306	11	16	0.000000000000105932
Eucalyptus grandis	scaffold_6	13	CH_egr_558	8	12	0.000000007223
Fragaria vesca	LG6	13	CH_fve_306	5	6	0.0000029537
Fragaria vesca	LG7	13	CH_fve_234	7	15	0.000000137338
Fragaria vesca	scf0513158	13	CH_fve_229	6	8	0.0000000923149
Glycine max	Gm01	13	CH_gma_566	4	4	0.0000891843
Glycine max	Gm03	13	CH_gma_102	9	13	0.000000000000614078
Glycine max	Gm05	13	CH_gma_564	4	4	0.0000891843
Glycine max	Gm06	13	CH_gma_725	4	5	0.000443656
Glycine max	Gm08	13	CH_gma_565	4	4	0.0000891843
Glycine max	Gm09	13	CH_gma_194	7	9	0.000000000797383
Glycine max	Gm09	13	CH_gma_344	5	5	0.000000564301
Glycine max	Gm10	13	CH_gma_241	7	12	0.0000000172543
Glycine max	Gm18	13	CH_gma_724	4	5	0.000443656
Glycine max	Gm19	13	CH_gma_247	6	7	0.0000000247863
Glycine max	Gm03	14	CH_gma_59	13	107	0.0000000137603
Glycine max	Gm10	14	CH_gma_79	13	235	0.000278053
Gossypium raimondii	Chr05	13	CH_gra_78	10	12	0.00000000000000168161
Gossypium raimondii	Chr06	13	CH_gra_442	4	4	0.000133922
Gossypium raimondii	Chr06	13	CH_gra_570	4	5	0.000665485
Gossypium raimondii	Chr08	13	CH_gra_571	4	5	0.000665485
Gossypium raimondii	Chr09	13	CH_gra_412	5	8	0.0000564087
Gossypium raimondii	Chr09	13	CH_gra_204	7	11	0.0000000191962
Gossypium raimondii	Chr05	14	CH_gra_48	10	12	0.00000000000000168161
Malus domestica	12	13	CH_mdo_282	5	11	0.0000270686
Malus domestica	15	13	CH_mdo_548	4	7	0.000493515
Malus domestica	5	13	CH_mdo_427	4	6	0.000212224
Malus domestica	6	13	CH_mdo_221	5	8	0.00000331577
Manihot esculenta	scaffold03332	13	CH_mes_419	4	5	0.000713529
Manihot esculenta	scaffold05162	13	CH_mes_16	12	15	2.30714e-18
Manihot esculenta	scaffold08860	13	CH_mes_293	4	4	0.000143744
Manihot esculenta	scaffold11297	13	CH_mes_292	4	4	0.000143744
Manihot esculenta	scaffold05162	14	CH_mes_10	12	15	2.30714e-18
Medicago truncatula	chr3	13	CH_mtr_1007	4	5	0.000192048
Medicago truncatula	chr4	13	CH_mtr_409	6	8	0.000000025559
Medicago truncatula	chr8	13	CH_mtr_1006	4	5	0.000192048
Oryza sativa ssp. japonica	1	13	CH_osa_561	4	4	0.0000398891
Oryza sativa ssp. japonica	1	13	CH_osa_215	7	11	0.00000000171812
Oryza sativa ssp. japonica	10	13	CH_osa_90	12	33	0.00000000000000550475
Oryza sativa ssp. japonica	2	13	CH_osa_646	6	24	0.000129645
Oryza sativa ssp. japonica	1	14	CH_osa_132	11	190	0.000326266
Oryza sativa ssp. japonica	10	14	CH_osa_62	12	33	0.00000000000000550475
Oryza sativa ssp. japonica	10	15	CH_osa_4	9	33	0.0000000000135376
Populus trichocarpa	Chr01	13	CH_ptr_185	7	7	0.0000000000893762
Populus trichocarpa	Chr02	13	CH_ptr_396	5	5	0.00000139421
Populus trichocarpa	Chr09	13	CH_ptr_385	7	16	0.00000095986
Populus trichocarpa	Chr14	13	CH_ptr_80	10	10	4.48196e-17
Populus trichocarpa	Chr14	14	CH_ptr_65	10	10	4.48196e-17
Populus trichocarpa	Chr14	14	CH_ptr_83	22	228	0.0000000000011105
Prunus persica	scaffold_1	13	CH_ppe_573	4	4	0.000151505
Prunus persica	scaffold_2	13	CH_ppe_385	6	10	0.00000222689
Prunus persica	scaffold_7	13	CH_ppe_205	8	12	0.000000000371622
Ricinus communis	29792	13	CH_rco_311	4	4	0.000100033
Ricinus communis	30148	13	CH_rco_99	7	9	0.00000000195808
Solanum lycopersicum	ch02	13	CH_sly_535	4	4	0.0000621361
Solanum lycopersicum	ch03	13	CH_sly_55	10	10	4.0929e-18
Solanum lycopersicum	ch04	13	CH_sly_534	4	4	0.0000621361
Solanum lycopersicum	ch04	13	CH_sly_556	5	10	0.0000979596
Solanum lycopersicum	ch06	13	CH_sly_299	5	5	0.000000399314
Solanum lycopersicum	ch07	13	CH_sly_56	10	10	4.0929e-18
Solanum lycopersicum	ch08	13	CH_sly_40	11	11	2.56026e-20
Solanum lycopersicum	ch09	13	CH_sly_137	7	7	0.0000000000162725
Solanum lycopersicum	ch03	14	CH_sly_38	10	10	4.0929e-18
Solanum lycopersicum	ch07	14	CH_sly_39	10	10	4.0929e-18
Solanum lycopersicum	ch08	14	CH_sly_30	11	11	2.56026e-20
Solanum lycopersicum	ch09	14	CH_sly_59	10	44	0.0000000083579
Solanum tuberosum	chr04	13	CH_stu_516	9	29	0.00000103019
Solanum tuberosum	chr08	13	CH_stu_624	5	5	0.00000733366
Solanum tuberosum	chr09	13	CH_stu_623	5	5	0.00000733366
Solanum tuberosum	chr10	13	CH_stu_622	5	5	0.00000733366
Thellungiella parvula	ch1-1	13	CH_tpa_309	4	6	0.000681951
Thellungiella parvula	ch2-4	13	CH_tpa_4	13	15	7.23456e-23
Thellungiella parvula	ch5-1	13	CH_tpa_189	4	4	0.0000459389
Thellungiella parvula	ch7-6	13	CH_tpa_20	9	12	0.000000000000103277
Thellungiella parvula	ch2-4	14	CH_tpa_4	13	15	7.23456e-23
Theobroma cacao	scaffold_1	13	CH_tca_310	5	5	0.00000100942
Theobroma cacao	scaffold_3	13	CH_tca_255	6	8	0.000000222387
Theobroma cacao	scaffold_3	13	CH_tca_402	5	7	0.0000209154
Theobroma cacao	scaffold_7	13	CH_tca_100	8	9	0.00000000000452102
Vitis vinifera	chr13	13	CH_vvi_261	6	8	0.000000161162
Zea mays	1	13	CH_zma_227	5	7	0.00000400384
Zea mays	3	13	CH_zma_145	6	9	0.0000000857744
Zea mays	8	13	CH_zma_228	5	7	0.00000400384

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V