PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR016196
Description: Major facilitator superfamily domain, general substrate transporter

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00009	13	CH_atr_259	5	7	0.00000638629
Amborella trichopoda	scaffold00013	13	CH_atr_193	5	5	0.000000307425
Beta vulgaris	Bvchr5.sca023	13	CH_bvu_115	11	48	0.0000000052149
Beta vulgaris	Bvchr5.sca023	14	CH_bvu_15	11	48	0.0000000052149
Capsella rubella	scaffold_3	13	CH_cru_291	5	6	0.00000580725
Citrullus lanatus	Chr6	13	CH_cla_206	6	12	0.00000690333
Citrullus lanatus	Chr3	14	CH_cla_18	10	17	0.000000000000622678
Citrus sinensis	scaffold00009	13	CH_csi_131	7	16	0.000000544793
Cucumis melo	CM3.5_scaffold00030	13	CH_cme_319	5	10	0.000133365
Cucumis melo	CM3.5_scaffold00006	14	CH_cme_33	13	185	0.0000344882
Cucumis melo	CM3.5_scaffold00017	14	CH_cme_32	11	115	0.0000254638
Eucalyptus grandis	scaffold_11	13	CH_egr_778	7	16	0.00000159203
Eucalyptus grandis	scaffold_11	14	CH_egr_238	11	72	0.00000160342
Medicago truncatula	chr4	14	CH_mtr_181	11	217	0.000624723
Oryza sativa ssp. japonica	12	13	CH_osa_678	5	13	0.000205789
Oryza sativa ssp. japonica	4	13	CH_osa_664	4	5	0.000167712
Oryza sativa ssp. japonica	6	13	CH_osa_663	4	5	0.000167712
Solanum lycopersicum	ch03	13	CH_sly_640	6	20	0.0002463
Solanum tuberosum	chr03	13	CH_stu_795	6	15	0.0000583968
Theobroma cacao	scaffold_9	13	CH_tca_557	6	22	0.000270938
Theobroma cacao	scaffold_8	14	CH_tca_71	10	109	0.000219537

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V