PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00013	13	CH_atr_300	5	44	0.0000365491
Arabidopsis lyrata	scaffold_8	13	CH_aly_598	4	8	0.000870392
Arabidopsis thaliana	4	13	CH_ath_73	11	62	0.00000000000240738
Arabidopsis thaliana	4	14	CH_ath_25	11	62	0.00000000000240738
Brassica rapa	A04	13	CH_bra_254	4	4	0.0000151605
Capsella rubella	scaffold_8	13	CH_cru_95	7	8	0.0000000000117311
Capsella rubella	scaffold_8	14	CH_cru_43	10	98	0.00000137654
Solanum tuberosum	chr02	13	CH_stu_1031	4	16	0.000517509
Solanum tuberosum	chr04	13	CH_stu_723	5	28	0.0000446581

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V