PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_130	5	34	0.000000000694869
Arabidopsis thaliana	1	13	CH_ath_72	6	34	0.00000000000190531
Brassica rapa	A03	13	CH_bra_81	4	4	0.00000000112173
Brassica rapa	A08	13	CH_bra_497	3	13	0.00085937
Brassica rapa	A09	13	CH_bra_202	3	3	0.00000301394
Capsella rubella	scaffold_1	13	CH_cru_214	3	3	0.000000305845
Citrullus lanatus	Chr7	13	CH_cla_161	3	3	0.000000217339
Cucumis melo	CM3.5_scaffold00031	13	CH_cme_22	8	12	1.18859e-21
Fragaria vesca	LG6	13	CH_fve_164	5	21	0.00000000251621
Malus domestica	17	13	CH_mdo_138	3	3	0.000000178975
Populus trichocarpa	Chr11	13	CH_ptr_282	3	5	0.0000000372027
Prunus persica	scaffold_3	13	CH_ppe_235	4	4	0.00000000267474
Prunus persica	scaffold_4	13	CH_ppe_107	6	9	0.000000000000045492
Thellungiella parvula	ch1-1	13	CH_tpa_350	3	26	0.000858932
Thellungiella parvula	ch3-1	13	CH_tpa_149	3	5	0.00000331463

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V