PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR015300
Description: DNA-binding pseudobarrel domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	13	CH_aly_101	10	41	0.0000000000518777
Arabidopsis lyrata	scaffold_4	14	CH_aly_33	10	41	0.0000000000518777
Arabidopsis thaliana	2	13	CH_ath_58	8	12	0.000000000000367037
Brassica rapa	A03	13	CH_bra_276	4	4	0.0000251785
Capsella rubella	scaffold_4	13	CH_cru_218	7	25	0.000000326727
Capsella rubella	scaffold_6	13	CH_cru_407	5	14	0.0000791554
Carica papaya	supercontig_132	13	CH_cpa_55	7	22	0.00000000168312
Carica papaya	supercontig_62	13	CH_cpa_121	4	4	0.000000803929
Eucalyptus grandis	scaffold_5	13	CH_egr_32	24	78	9.63886e-37
Eucalyptus grandis	scaffold_5	14	CH_egr_13	32	118	1.67897e-48
Fragaria vesca	LG3	13	CH_fve_271	5	7	0.000000671704
Gossypium raimondii	Chr05	13	CH_gra_216	5	5	0.0000000413214
Gossypium raimondii	Chr11	13	CH_gra_299	5	8	0.00000229086
Gossypium raimondii	Chr12	13	CH_gra_16	17	22	1.07669e-32
Gossypium raimondii	Chr12	14	CH_gra_19	17	22	1.07669e-32
Manihot esculenta	scaffold06914	13	CH_mes_7	15	25	1.13137e-25
Manihot esculenta	scaffold06914	14	CH_mes_7	15	25	1.13137e-25
Medicago truncatula	chr1	13	CH_mtr_50	13	18	2.07823e-24
Medicago truncatula	chr1	13	CH_mtr_706	8	72	0.00000798317
Medicago truncatula	chr1	14	CH_mtr_148	10	100	0.000000107263
Medicago truncatula	chr1	14	CH_mtr_52	13	18	2.07823e-24
Populus trichocarpa	Chr03	13	CH_ptr_40	20	80	1.38705e-25
Populus trichocarpa	Chr04	13	CH_ptr_476	4	4	0.0000127446
Populus trichocarpa	Chr04	13	CH_ptr_16	18	21	4.44263e-36
Populus trichocarpa	Chr11	13	CH_ptr_189	7	10	0.000000000106881
Populus trichocarpa	Chr03	14	CH_ptr_41	20	80	1.38705e-25
Populus trichocarpa	Chr04	14	CH_ptr_17	18	21	4.44263e-36
Prunus persica	scaffold_1	13	CH_ppe_422	4	4	0.00000697996
Prunus persica	scaffold_5	13	CH_ppe_423	4	4	0.00000697996
Prunus persica	scaffold_7	13	CH_ppe_424	4	4	0.00000697996
Prunus persica	scaffold_8	13	CH_ppe_253	9	49	0.0000000101993
Prunus persica	scaffold_8	14	CH_ppe_85	11	100	0.00000000813672
Ricinus communis	29851	13	CH_rco_63	7	13	0.0000000000160302
Solanum lycopersicum	ch08	14	CH_sly_41	10	16	2.33791e-17
Solanum tuberosum	chr02	13	CH_stu_512	5	8	0.000000834079
Theobroma cacao	scaffold_2	13	CH_tca_8	19	23	4.19556e-39
Theobroma cacao	scaffold_2	13	CH_tca_10	23	60	7.57766e-36
Theobroma cacao	scaffold_4	13	CH_tca_651	4	9	0.000968203
Theobroma cacao	scaffold_2	14	CH_tca_9	19	23	4.19556e-39
Theobroma cacao	scaffold_2	14	CH_tca_11	23	60	7.57766e-36

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V