PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR014733
Description: Barwin-like endoglucanase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	13	CH_atr_192	4	5	0.000000302785
Amborella trichopoda	scaffold00005	13	CH_atr_90	5	5	0.000000000069474
Citrus sinensis	scaffold00048	13	CH_csi_129	4	4	0.000000472026
Cucumis melo	CM3.5_scaffold00115	13	CH_cme_320	3	3	0.000133422
Eucalyptus grandis	scaffold_2	13	CH_egr_732	4	4	0.000000651315
Glycine max	Gm03	13	CH_gma_489	5	20	0.0000226234
Gossypium raimondii	Chr08	13	CH_gra_183	5	5	0.00000000239469
Gossypium raimondii	Chr09	13	CH_gra_182	5	5	0.00000000239469
Lotus japonicus	chr1	13	CH_lja_89	4	8	0.000000465808
Manihot esculenta	scaffold03581	13	CH_mes_169	4	5	0.0000034661
Manihot esculenta	scaffold04182	13	CH_mes_130	4	4	0.000000694519
Manihot esculenta	scaffold12946	13	CH_mes_213	4	7	0.0000241721
Medicago truncatula	chr4	13	CH_mtr_1096	3	4	0.000350942
Medicago truncatula	chr4	13	CH_mtr_868	3	3	0.0000878075
Medicago truncatula	chr7	13	CH_mtr_668	5	24	0.00000417111
Medicago truncatula	chr7	13	CH_mtr_87	9	17	2.60732e-18
Medicago truncatula	chr8	13	CH_mtr_595	4	6	0.00000141186
Medicago truncatula	chr7	14	CH_mtr_79	10	37	3.60641e-17
Oryza sativa ssp. japonica	10	13	CH_osa_187	6	13	0.000000000484605
Populus trichocarpa	Chr14	13	CH_ptr_547	4	10	0.0000628861
Prunus persica	scaffold_2	13	CH_ppe_61	9	13	2.2377e-18
Prunus persica	scaffold_6	13	CH_ppe_407	4	6	0.00000420099
Prunus persica	scaffold_2	14	CH_ppe_94	10	288	0.00000299528
Ricinus communis	30174	13	CH_rco_370	3	4	0.000345822
Solanum lycopersicum	ch01	13	CH_sly_569	3	3	0.000136876
Solanum tuberosum	chr01	13	CH_stu_1121	3	4	0.000930341
Solanum tuberosum	chr11	13	CH_stu_237	6	7	0.00000000000938893
Vitis vinifera	chr15	13	CH_vvi_170	5	5	0.000000000688826

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V