PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr2.sca018	14	CH_bvu_18	11	111	0.000000702676
Eucalyptus grandis	scaffold_10	14	CH_egr_197	10	37	0.000000000147928
Fragaria vesca	LG3	14	CH_fve_29	10	19	0.0000000000000264452
Malus domestica	6	13	CH_mdo_621	3	3	0.000897559
Medicago truncatula	chr2	14	CH_mtr_164	10	211	0.0000200598
Oryza sativa ssp. japonica	2	14	CH_osa_121	10	217	0.0000126916
Populus trichocarpa	Chr04	13	CH_ptr_194	6	6	0.000000000135338
Prunus persica	scaffold_2	14	CH_ppe_76	10	50	0.00000000109828
Prunus persica	scaffold_4	14	CH_ppe_80	10	57	0.0000000044871
Solanum lycopersicum	ch01	13	CH_sly_220	5	5	0.0000000168489
Solanum lycopersicum	ch01	14	CH_sly_68	10	172	0.0000195226
Vitis vinifera	chr12	14	CH_vvi_60	10	38	0.0000000000120733

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V