PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013831
Description: SGNH hydrolase-type esterase domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00007	13	CH_atr_492	3	3	0.000512933
Amborella trichopoda	scaffold00010	13	CH_atr_287	4	6	0.0000202864
Amborella trichopoda	scaffold00016	13	CH_atr_129	6	11	0.00000000415883
Amborella trichopoda	scaffold00016	13	CH_atr_153	5	6	0.0000000212107
Amborella trichopoda	scaffold00049	13	CH_atr_172	5	7	0.0000000740757
Amborella trichopoda	scaffold00016	14	CH_atr_37	11	191	0.000000125066
Beta vulgaris	Bvchr7.sca021	13	CH_bvu_47	8	12	0.000000000000349753
Beta vulgaris	Bvchr8.sca011	13	CH_bvu_153	5	6	0.0000000937932
Beta vulgaris	Bvchr7.sca021	15	CH_bvu_8	3	3	0.000257699
Brassica rapa	A07	13	CH_bra_142	5	6	0.000000155582
Carica papaya	supercontig_76	13	CH_cpa_127	4	4	0.00000133877
Citrullus lanatus	Chr1	13	CH_cla_77	8	18	0.0000000000208573
Citrus sinensis	scaffold00366	13	CH_csi_82	5	5	0.00000000948741
Cucumis melo	CM3.5_scaffold00018	13	CH_cme_459	3	3	0.000569759
Eucalyptus grandis	scaffold_4	13	CH_egr_351	10	38	0.00000000000218995
Eucalyptus grandis	scaffold_9	13	CH_egr_120	11	12	1.87846e-22
Eucalyptus grandis	scaffold_4	14	CH_egr_186	10	38	0.00000000000218995
Eucalyptus grandis	scaffold_9	14	CH_egr_104	11	12	1.87846e-22
Fragaria vesca	scf0513160	13	CH_fve_11	16	25	1.82638e-30
Fragaria vesca	scf0513160	14	CH_fve_12	16	25	1.82638e-30
Glycine max	Gm06	13	CH_gma_503	5	11	0.0000273318
Glycine max	Gm15	13	CH_gma_184	8	20	0.00000000046515
Glycine max	Gm15	14	CH_gma_46	13	96	0.0000000000106826
Gossypium raimondii	Chr09	13	CH_gra_125	6	6	0.0000000000290752
Lotus japonicus	chr1	13	CH_lja_142	5	20	0.0000116201
Malus domestica	12	13	CH_mdo_31	6	6	0.00000000000437161
Manihot esculenta	scaffold06582	13	CH_mes_79	5	5	0.0000000155987
Medicago truncatula	chr1	13	CH_mtr_531	5	8	0.000000463641
Medicago truncatula	chr1	13	CH_mtr_656	4	4	0.00000319563
Medicago truncatula	chr2	13	CH_mtr_207	8	15	0.000000000000903387
Medicago truncatula	chr4	13	CH_mtr_694	5	12	0.00000650034
Medicago truncatula	chr7	13	CH_mtr_232	7	10	0.00000000000663646
Medicago truncatula	chr2	14	CH_mtr_100	17	237	0.0000000000000114154
Oryza sativa ssp. japonica	2	13	CH_osa_511	5	17	0.0000254815
Oryza sativa ssp. japonica	3	13	CH_osa_356	5	9	0.00000052702
Populus trichocarpa	Chr11	13	CH_ptr_130	7	7	0.000000000000535904
Populus trichocarpa	Chr17	13	CH_ptr_257	10	70	0.00000000921827
Populus trichocarpa	Chr18	13	CH_ptr_90	9	11	4.16772e-16
Populus trichocarpa	Chr19	13	CH_ptr_47	12	15	1.75603e-22
Populus trichocarpa	Chr11	14	CH_ptr_99	11	147	0.000000786734
Populus trichocarpa	Chr17	14	CH_ptr_91	10	70	0.00000000921827
Populus trichocarpa	Chr18	14	CH_ptr_108	11	257	0.000297874
Populus trichocarpa	Chr19	14	CH_ptr_46	12	15	1.75603e-22
Prunus persica	scaffold_16	13	CH_ppe_182	8	18	0.0000000000855814
Prunus persica	scaffold_3	13	CH_ppe_28	13	14	2.30284e-26
Prunus persica	scaffold_4	13	CH_ppe_486	4	5	0.0000401034
Prunus persica	scaffold_4	13	CH_ppe_189	7	11	0.000000000167752
Prunus persica	scaffold_3	14	CH_ppe_28	13	14	2.30284e-26
Prunus persica	scaffold_4	14	CH_ppe_72	14	147	0.000000000051418
Prunus persica	scaffold_16	15	CH_ppe_13	3	4	0.000910923
Solanum lycopersicum	ch01	13	CH_sly_71	8	8	4.71851e-16
Solanum lycopersicum	ch02	13	CH_sly_702	5	23	0.000455567
Solanum lycopersicum	ch02	13	CH_sly_105	8	12	0.00000000000023093
Solanum lycopersicum	ch01	14	CH_sly_72	10	227	0.000205448
Solanum lycopersicum	ch02	14	CH_sly_55	13	176	0.00000000134694
Solanum tuberosum	chr01	13	CH_stu_133	9	12	8.65541e-16
Solanum tuberosum	chr06	13	CH_stu_52	12	12	1.66481e-25
Solanum tuberosum	chr10	13	CH_stu_329	7	15	0.00000000198378
Solanum tuberosum	chr01	14	CH_stu_113	10	55	0.000000000352421
Solanum tuberosum	chr02	14	CH_stu_140	11	211	0.0000180976
Solanum tuberosum	chr06	14	CH_stu_52	12	12	1.66481e-25
Theobroma cacao	scaffold_5	13	CH_tca_344	4	4	0.00000388093
Theobroma cacao	scaffold_6	13	CH_tca_409	5	14	0.0000250599
Theobroma cacao	scaffold_7	13	CH_tca_263	5	7	0.000000268002
Vitis vinifera	chr14	13	CH_vvi_384	4	4	0.00000610177
Zea mays	3	13	CH_zma_65	6	7	0.000000000158136
Zea mays	8	13	CH_zma_112	6	11	0.0000000103364

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V