PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00014	13	CH_atr_366	3	4	0.000109551
Carica papaya	supercontig_58	13	CH_cpa_145	3	3	0.00000404354
Citrus sinensis	scaffold00132	13	CH_csi_37	6	9	0.00000000000073004
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_224	3	4	0.00001968
Eucalyptus grandis	scaffold_8	13	CH_egr_192	7	9	3.9013e-17
Gossypium raimondii	Chr02	13	CH_gra_350	3	3	0.000012525
Gossypium raimondii	Chr11	13	CH_gra_349	3	3	0.000012525
Medicago truncatula	chr4	13	CH_mtr_572	5	42	0.000000948062
Populus trichocarpa	Chr10	13	CH_ptr_73	8	12	3.57788e-18
Prunus persica	scaffold_1	13	CH_ppe_438	3	3	0.0000103669
Prunus persica	scaffold_2	13	CH_ppe_651	3	7	0.000362084
Prunus persica	scaffold_2	13	CH_ppe_437	3	3	0.0000103669
Ricinus communis	29844	13	CH_rco_220	3	3	0.00000526526
Solanum lycopersicum	ch06	13	CH_sly_457	3	4	0.0000304036
Solanum tuberosum	chr06	13	CH_stu_225	5	5	0.0000000000041868
Thellungiella parvula	ch3-5	13	CH_tpa_304	3	7	0.000509379
Theobroma cacao	scaffold_4	13	CH_tca_38	7	8	3.18652e-18

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V