PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR013210
Description: Leucine-rich repeat-containing N-terminal, type 2

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	13	CH_aly_597	4	6	0.00084926
Arabidopsis thaliana	1	13	CH_ath_342	5	9	0.0000377006
Beta vulgaris	Bvchr3.sca009	13	CH_bvu_54	8	9	0.00000000000177561
Beta vulgaris	Bvchr4.sca016	13	CH_bvu_284	4	4	0.0000675165
Beta vulgaris	Bvchr3.sca009	14	CH_bvu_12	10	25	0.0000000000306673
Brassica rapa	A01	13	CH_bra_172	5	5	0.000000861118
Brassica rapa	A10	13	CH_bra_116	6	7	0.0000000435508
Capsella rubella	scaffold_6	13	CH_cru_484	8	53	0.000390656
Eucalyptus grandis	scaffold_11	13	CH_egr_179	13	15	8.43944e-18
Eucalyptus grandis	scaffold_5	13	CH_egr_1043	6	10	0.000089283
Eucalyptus grandis	scaffold_6	13	CH_egr_953	6	9	0.0000361869
Eucalyptus grandis	scaffold_7	13	CH_egr_938	8	22	0.0000274992
Eucalyptus grandis	scaffold_8	13	CH_egr_894	6	8	0.0000122224
Eucalyptus grandis	scaffold_8	13	CH_egr_1280	6	13	0.000701302
Eucalyptus grandis	scaffold_11	14	CH_egr_135	13	15	8.43944e-18
Glycine max	Gm18	14	CH_gma_72	16	206	0.0000282896
Gossypium raimondii	Chr02	13	CH_gra_578	4	4	0.000698518
Gossypium raimondii	Chr02	13	CH_gra_231	6	6	0.0000000941301
Gossypium raimondii	Chr09	13	CH_gra_87	11	15	0.0000000000000249468
Gossypium raimondii	Chr11	13	CH_gra_97	12	22	0.000000000000126798
Gossypium raimondii	Chr13	13	CH_gra_577	4	4	0.000698518
Gossypium raimondii	Chr09	14	CH_gra_50	11	15	0.0000000000000249468
Gossypium raimondii	Chr11	14	CH_gra_55	12	22	0.000000000000126798
Malus domestica	4	13	CH_mdo_294	8	44	0.000039464
Medicago truncatula	chr2	13	CH_mtr_591	5	5	0.00000133882
Medicago truncatula	chr5	13	CH_mtr_159	11	20	0.0000000000000295843
Medicago truncatula	chr6	13	CH_mtr_20	19	19	1.20123e-36
Medicago truncatula	chr7	13	CH_mtr_615	6	10	0.00000198563
Medicago truncatula	chr8	13	CH_mtr_382	12	72	0.0000000138014
Medicago truncatula	chr8	13	CH_mtr_780	5	7	0.0000277761
Medicago truncatula	chr5	14	CH_mtr_105	11	20	0.0000000000000295843
Medicago truncatula	chr5	14	CH_mtr_95	22	191	0.00000000000000352377
Medicago truncatula	chr6	14	CH_mtr_23	19	19	1.20123e-36
Medicago truncatula	chr8	14	CH_mtr_140	12	72	0.0000000138014
Oryza sativa ssp. japonica	11	13	CH_osa_47	19	79	2.37463e-20
Oryza sativa ssp. japonica	11	13	CH_osa_594	4	4	0.0000809201
Oryza sativa ssp. japonica	12	13	CH_osa_276	11	69	0.0000000323888
Oryza sativa ssp. japonica	2	13	CH_osa_759	5	12	0.000378415
Oryza sativa ssp. japonica	6	13	CH_osa_395	6	11	0.00000135993
Oryza sativa ssp. japonica	11	14	CH_osa_44	19	79	2.37463e-20
Oryza sativa ssp. japonica	12	14	CH_osa_95	13	116	0.0000000272041
Populus trichocarpa	Chr12	13	CH_ptr_68	17	42	1.3521e-18
Populus trichocarpa	Chr15	13	CH_ptr_268	8	14	0.0000000158767
Populus trichocarpa	Chr12	14	CH_ptr_59	30	235	6.53224e-19
Prunus persica	scaffold_6	13	CH_ppe_630	4	4	0.000254424
Prunus persica	scaffold_6	13	CH_ppe_390	5	5	0.00000246702
Prunus persica	scaffold_6	14	CH_ppe_95	18	258	0.000003109
Solanum lycopersicum	ch12	13	CH_sly_320	7	17	0.000000794643
Solanum tuberosum	chr03	13	CH_stu_1125	4	5	0.000971842
Thellungiella parvula	ch6-6	13	CH_tpa_305	7	44	0.000519194
Theobroma cacao	scaffold_4	13	CH_tca_183	7	8	0.00000000507641
Theobroma cacao	scaffold_6	13	CH_tca_486	5	7	0.000107259
Theobroma cacao	scaffold_7	13	CH_tca_31	19	44	1.88253e-21
Vitis vinifera	chr7	13	CH_vvi_508	4	4	0.000112585
Vitis vinifera	chr8	13	CH_vvi_296	6	9	0.000000586263
Zea mays	4	13	CH_zma_79	7	10	0.00000000118259

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V