PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_3	27	71	1.11821e-36
Arabidopsis lyrata	scaffold_4	13	CH_aly_364	4	4	0.0000550245
Arabidopsis lyrata	scaffold_5	13	CH_aly_220	5	5	0.000000350917
Arabidopsis lyrata	scaffold_5	13	CH_aly_422	7	38	0.000149469
Arabidopsis lyrata	scaffold_1	14	CH_aly_3	27	71	1.11821e-36
Arabidopsis thaliana	1	13	CH_ath_301	5	12	0.00000895896
Arabidopsis thaliana	1	13	CH_ath_147	9	54	0.00000000487802
Arabidopsis thaliana	1	13	CH_ath_531	5	25	0.000580752
Arabidopsis thaliana	3	13	CH_ath_339	5	15	0.0000337018
Arabidopsis thaliana	1	14	CH_ath_33	11	119	0.00000000728549
Arabidopsis thaliana	1	14	CH_ath_38	13	271	0.000000201771
Brassica rapa	A04	13	CH_bra_7	13	23	1.27431e-21
Brassica rapa	A05	13	CH_bra_228	4	4	0.0000089296
Brassica rapa	A05	13	CH_bra_330	4	5	0.000133125
Brassica rapa	A04	14	CH_bra_7	13	23	1.27431e-21
Capsella rubella	scaffold_1	13	CH_cru_91	13	77	0.00000000000587807
Capsella rubella	scaffold_4	13	CH_cru_94	8	12	0.00000000000690379
Capsella rubella	scaffold_1	14	CH_cru_25	16	112	0.0000000000000282901
Medicago truncatula	chr7	13	CH_mtr_869	3	12	0.0000887255
Oryza sativa ssp. japonica	4	13	CH_osa_364	5	42	0.000000672114
Prunus persica	scaffold_1	13	CH_ppe_371	5	23	0.00000159225
Prunus persica	scaffold_2	13	CH_ppe_316	4	5	0.000000229737
Solanum lycopersicum	ch04	13	CH_sly_416	3	3	0.0000113569
Solanum tuberosum	chr02	13	CH_stu_845	3	3	0.000158056
Solanum tuberosum	chr03	13	CH_stu_1074	4	17	0.000589775
Solanum tuberosum	chr11	13	CH_stu_468	4	4	0.000000251968
Zea mays	10	13	CH_zma_383	2	2	0.000150875

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V