PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_2	13	CH_cre_71	3	4	0.0000218606
Citrus sinensis	scaffold00113	13	CH_csi_113	4	6	0.000000270586
Fragaria vesca	LG2	13	CH_fve_133	7	20	0.000000000267181
Fragaria vesca	LG7	13	CH_fve_369	4	7	0.0000182739
Fragaria vesca	LG7	13	CH_fve_6	18	26	1.57747e-39
Fragaria vesca	LG2	14	CH_fve_38	12	162	0.0000000000214774
Fragaria vesca	LG7	14	CH_fve_6	18	26	1.57747e-39
Gossypium raimondii	Chr06	13	CH_gra_369	3	3	0.000023363
Malus domestica	1	13	CH_mdo_35	7	29	0.0000000000180233
Malus domestica	1	14	CH_mdo_15	10	139	0.00000000000209554
Medicago truncatula	chr2	13	CH_mtr_246	7	16	0.0000000000221078
Medicago truncatula	chr6	13	CH_mtr_67	13	46	2.40453e-21
Medicago truncatula	chr7	13	CH_mtr_9	21	33	1.41842e-46
Medicago truncatula	chr7	13	CH_mtr_1061	3	3	0.000296382
Medicago truncatula	chr6	14	CH_mtr_67	13	46	2.40453e-21
Medicago truncatula	chr7	14	CH_mtr_11	21	33	1.41842e-46
Populus trichocarpa	Chr08	13	CH_ptr_238	5	10	0.0000000037627
Populus trichocarpa	Chr10	13	CH_ptr_262	5	12	0.0000000118103
Zea mays	10	13	CH_zma_541	3	6	0.000869111

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V