PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_281	7	9	0.00000399818
Arabidopsis thaliana	5	14	CH_ath_49	14	92	0.000888218
Beta vulgaris	Bvchr6.sca003	13	CH_bvu_148	9	16	0.0000000585482
Beta vulgaris	Bvchr6.sca003	14	CH_bvu_26	10	48	0.000365628
Eucalyptus grandis	scaffold_10	13	CH_egr_864	6	7	0.00000715971
Eucalyptus grandis	scaffold_3	13	CH_egr_941	7	13	0.0000285165
Fragaria vesca	LG1	14	CH_fve_51	10	27	0.00000201346
Medicago truncatula	chr1	13	CH_mtr_926	5	6	0.000107077
Oryza sativa ssp. japonica	1	13	CH_osa_503	6	9	0.0000215943
Ricinus communis	29739	13	CH_rco_376	5	6	0.00042717
Zea mays	2	13	CH_zma_506	8	23	0.000585297
Zea mays	2	14	CH_zma_26	10	36	0.000107801

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V