PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	13	CH_aly_415	3	5	0.0001209
Arabidopsis thaliana	3	13	CH_ath_295	3	3	0.00000706782
Brassica rapa	A04	13	CH_bra_121	4	5	0.0000000658725
Brassica rapa	A07	13	CH_bra_263	3	3	0.00001832
Citrullus lanatus	Chr11	13	CH_cla_211	3	3	0.00000886744
Citrus sinensis	scaffold00004	13	CH_csi_201	3	4	0.0000230067
Eucalyptus grandis	scaffold_5	13	CH_egr_289	6	7	0.0000000000000403877
Eucalyptus grandis	scaffold_9	13	CH_egr_172	7	7	3.71082e-18
Fragaria vesca	LG5	13	CH_fve_303	3	3	0.00000244713
Gossypium raimondii	Chr09	13	CH_gra_411	3	4	0.0000560826
Gossypium raimondii	Chr10	13	CH_gra_355	3	3	0.0000140281
Malus domestica	15	13	CH_mdo_164	3	3	0.000000703115
Thellungiella parvula	ch5-1	13	CH_tpa_172	3	3	0.000014589
Theobroma cacao	scaffold_8	13	CH_tca_404	3	4	0.0000227444

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V