PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00077	13	CH_atr_306	3	3	0.0000560722
Capsella rubella	scaffold_4	13	CH_cru_480	3	3	0.000364077
Chlamydomonas reinhardtii	chromosome_4	13	CH_cre_167	6	63	0.00070791
Chlamydomonas reinhardtii	chromosome_4	14	CH_cre_9	11	181	0.000000132482
Eucalyptus grandis	scaffold_5	13	CH_egr_208	8	11	1.46621e-16
Gossypium raimondii	Chr12	13	CH_gra_167	5	5	0.000000000984679
Oryza sativa ssp. japonica	2	13	CH_osa_438	5	12	0.00000506636
Oryza sativa ssp. japonica	8	13	CH_osa_106	8	13	0.000000000000131583
Oryza sativa ssp. japonica	8	14	CH_osa_86	10	80	0.00000000088857
Prunus persica	scaffold_1	13	CH_ppe_70	8	9	3.48836e-17
Prunus persica	scaffold_1	14	CH_ppe_67	10	75	0.00000000000819026
Zea mays	1	13	CH_zma_165	4	4	0.00000032992

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V