PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR012337
Description: Ribonuclease H-like domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	13	CH_aly_311	4	4	0.0000080557
Arabidopsis thaliana	3	13	CH_ath_131	6	7	0.000000000881122
Arabidopsis thaliana	3	14	CH_ath_41	10	145	0.0000136122
Brassica rapa	A01	13	CH_bra_325	4	7	0.000115649
Capsella rubella	scaffold_3	13	CH_cru_336	4	4	0.0000216569
Oryza sativa ssp. japonica	10	13	CH_osa_591	24	79	0.0000779406
Oryza sativa ssp. japonica	10	14	CH_osa_136	52	299	0.000423144
Oryza sativa ssp. japonica	10	14	CH_osa_90	60	284	0.00000000695236
Oryza sativa ssp. japonica	11	14	CH_osa_127	52	283	0.0000595918
Oryza sativa ssp. japonica	12	14	CH_osa_80	65	286	0.0000000000162853
Oryza sativa ssp. japonica	3	14	CH_osa_92	57	264	0.0000000107474
Oryza sativa ssp. japonica	4	14	CH_osa_133	48	264	0.000363256
Oryza sativa ssp. japonica	4	14	CH_osa_107	58	297	0.000000539404
Oryza sativa ssp. japonica	4	14	CH_osa_126	54	299	0.0000550594
Oryza sativa ssp. japonica	5	14	CH_osa_83	65	300	0.000000000190569
Oryza sativa ssp. japonica	6	14	CH_osa_129	52	294	0.000234018
Oryza sativa ssp. japonica	6	14	CH_osa_113	32	116	0.00000259323
Oryza sativa ssp. japonica	7	14	CH_osa_130	41	206	0.000307326
Oryza sativa ssp. japonica	8	14	CH_osa_114	56	293	0.0000029144
Oryza sativa ssp. japonica	8	14	CH_osa_102	45	191	0.000000150197
Oryza sativa ssp. japonica	10	15	CH_osa_63	23	79	0.000305618
Oryza sativa ssp. japonica	10	16	CH_osa_13	59	284	0.0000000113248
Oryza sativa ssp. japonica	12	16	CH_osa_9	62	286	0.000000000360545
Oryza sativa ssp. japonica	3	16	CH_osa_17	56	264	0.0000000185322
Oryza sativa ssp. japonica	4	16	CH_osa_35	48	264	0.000208484
Oryza sativa ssp. japonica	4	16	CH_osa_33	52	297	0.000186121
Oryza sativa ssp. japonica	4	16	CH_osa_29	53	299	0.0000844896
Oryza sativa ssp. japonica	5	16	CH_osa_8	64	300	0.000000000297992
Oryza sativa ssp. japonica	6	16	CH_osa_40	50	287	0.000436769
Oryza sativa ssp. japonica	7	16	CH_osa_34	41	206	0.000186263
Oryza sativa ssp. japonica	8	16	CH_osa_18	45	191	0.000000082767
Oryza sativa ssp. japonica	8	16	CH_osa_26	55	296	0.00000683099
Populus trichocarpa	Chr16	13	CH_ptr_58	14	35	4.14356e-20
Populus trichocarpa	Chr16	14	CH_ptr_56	14	35	4.14356e-20
Solanum lycopersicum	ch02	13	CH_sly_811	7	48	0.000952905

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V