PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00019	13	CH_atr_304	4	5	0.0000492489
Amborella trichopoda	scaffold00051	13	CH_atr_371	4	6	0.000147227
Beta vulgaris	Bvchr7.sca008	13	CH_bvu_170	6	14	0.000000420127
Citrullus lanatus	Chr2	14	CH_cla_26	10	109	0.0000185086
Citrus sinensis	scaffold00001	14	CH_csi_21	10	159	0.000212726
Eucalyptus grandis	scaffold_3	13	CH_egr_827	4	4	0.00000428468
Fragaria vesca	LG4	13	CH_fve_485	6	30	0.000134477
Glycine max	Gm02	14	CH_gma_77	10	129	0.000111955
Glycine max	Gm19	14	CH_gma_68	13	191	0.00000214923
Malus domestica	13	13	CH_mdo_236	4	4	0.00000535937
Manihot esculenta	scaffold11581	13	CH_mes_220	4	4	0.0000319584
Medicago truncatula	chr7	13	CH_mtr_940	6	32	0.000121211
Physcomitrella patens	scaffold_112	13	CH_ppa_161	4	12	0.000853909
Populus trichocarpa	Chr02	13	CH_ptr_696	4	6	0.000349634
Ricinus communis	29986	13	CH_rco_382	4	7	0.000526327
Ricinus communis	30076	13	CH_rco_146	5	5	0.0000000777599
Ricinus communis	29739	14	CH_rco_19	10	59	0.0000000118007
Ricinus communis	30076	15	CH_rco_12	3	3	0.000826747
Solanum tuberosum	chr06	13	CH_stu_500	5	6	0.000000590642
Vitis vinifera	chr12	13	CH_vvi_72	10	13	6.07599e-17
Vitis vinifera	chr12	14	CH_vvi_45	10	13	6.07599e-17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V