PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	13	CH_ath_325	4	4	0.0000207474
Beta vulgaris	Bvchr6.sca028	13	CH_bvu_205	5	8	0.00000258257
Eucalyptus grandis	scaffold_11	13	CH_egr_907	4	4	0.0000149552
Eucalyptus grandis	scaffold_5	13	CH_egr_906	4	4	0.0000149552
Eucalyptus grandis	scaffold_8	13	CH_egr_230	9	11	0.00000000000000140949
Eucalyptus grandis	scaffold_8	14	CH_egr_264	11	214	0.000180511
Glycine max	Gm07	13	CH_gma_606	4	4	0.000128588
Glycine max	Gm08	13	CH_gma_605	4	4	0.000128588
Lotus japonicus	chr2	13	CH_lja_85	5	9	0.000000330559
Medicago truncatula	chr2	13	CH_mtr_323	7	16	0.00000000112242
Medicago truncatula	chr4	13	CH_mtr_1166	4	9	0.000555666
Medicago truncatula	chr5	13	CH_mtr_1165	4	9	0.000555666
Oryza sativa ssp. japonica	1	13	CH_osa_766	4	8	0.000426943
Populus trichocarpa	Chr06	13	CH_ptr_513	4	4	0.000034554
Populus trichocarpa	Chr18	13	CH_ptr_512	4	4	0.000034554
Solanum tuberosum	chr01	13	CH_stu_666	4	4	0.000015691

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V