Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR011042
- Description
- Six-bladed beta-propeller, TolB-like
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Beta vulgaris | Bvchr3.sca010 | 13 | CH_bvu_275 | 3 | 3 | 0.0000511089 |
Brassica rapa | A04 | 13 | CH_bra_510 | 3 | 5 | 0.000967081 |
Citrus sinensis | scaffold00001 | 13 | CH_csi_211 | 3 | 3 | 0.0000356337 |
Malus domestica | 2 | 13 | CH_mdo_266 | 3 | 3 | 0.0000143659 |
Medicago truncatula | chr2 | 13 | CH_mtr_818 | 3 | 3 | 0.0000370382 |
Medicago truncatula | chr8 | 13 | CH_mtr_399 | 5 | 12 | 0.0000000182223 |
Populus trichocarpa | Chr16 | 13 | CH_ptr_501 | 3 | 3 | 0.000028908 |
Solanum tuberosum | chr03 | 13 | CH_stu_116 | 7 | 7 | 1.02797e-16 |
Solanum tuberosum | chr03 | 14 | CH_stu_112 | 10 | 156 | 0.000000000169726 |
Vitis vinifera | chr17 | 13 | CH_vvi_517 | 3 | 3 | 0.000166311 |
Vitis vinifera | chr4 | 13 | CH_vvi_49 | 9 | 11 | 1.99627e-19 |
Vitis vinifera | chr10 | 14 | CH_vvi_76 | 10 | 274 | 0.00000215317 |
Zea mays | 1 | 13 | CH_zma_213 | 4 | 7 | 0.00000282215 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |