PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR011009
Description: Protein kinase-like domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	14	CH_atr_39	27	218	0.00000235435
Arabidopsis thaliana	4	13	CH_ath_404	12	39	0.0000739581
Arabidopsis thaliana	4	14	CH_ath_45	12	39	0.0000739581
Beta vulgaris	Bvchr2_un.sca002	13	CH_bvu_168	8	9	0.000000400849
Brassica rapa	A06	14	CH_bra_28	13	44	0.00099135
Chlamydomonas reinhardtii	chromosome_11	13	CH_cre_88	6	6	0.000082232
Cucumis melo	CM3.5_scaffold00001	13	CH_cme_15	30	61	2.41234e-24
Cucumis melo	CM3.5_scaffold00067	13	CH_cme_85	13	20	0.0000000000597275
Cucumis melo	CM3.5_scaffold00001	14	CH_cme_15	30	61	2.41234e-24
Cucumis melo	CM3.5_scaffold00067	14	CH_cme_26	13	20	0.0000000000597275
Eucalyptus grandis	scaffold_11	14	CH_egr_229	55	298	0.000000204319
Eucalyptus grandis	scaffold_4	14	CH_egr_35	61	119	3.40908e-35
Eucalyptus grandis	scaffold_8	14	CH_egr_262	10	15	0.000131453
Malus domestica	4	13	CH_mdo_334	15	63	0.0000789255
Malus domestica	5	13	CH_mdo_146	18	68	0.000000275168
Malus domestica	4	14	CH_mdo_27	21	125	0.0000492365
Malus domestica	5	14	CH_mdo_18	26	113	0.000000000234938
Medicago truncatula	chr5	13	CH_mtr_1059	8	17	0.000289443
Populus trichocarpa	Chr17	14	CH_ptr_58	31	66	3.60954e-19
Prunus persica	scaffold_4	13	CH_ppe_238	22	71	0.00000000281326
Solanum lycopersicum	ch03	14	CH_sly_67	20	101	0.0000119779
Solanum tuberosum	chr02	13	CH_stu_147	18	26	0.00000000000000726081
Solanum tuberosum	chr07	13	CH_stu_358	18	46	0.00000000582304
Solanum tuberosum	chr02	14	CH_stu_108	30	112	0.00000000000990087
Solanum tuberosum	chr02	14	CH_stu_56	36	76	1.13882e-24
Solanum tuberosum	chr05	14	CH_stu_28	31	38	7.26844e-32
Solanum tuberosum	chr07	14	CH_stu_122	18	46	0.00000000582304
Theobroma cacao	scaffold_10r	13	CH_tca_45	22	38	4.23036e-17
Theobroma cacao	scaffold_10r	14	CH_tca_33	22	38	4.23036e-17
Theobroma cacao	scaffold_7	14	CH_tca_32	45	196	1.64327e-17
Vitis vinifera	chrUn	13	CH_vvi_519	10	22	0.00018422
Vitis vinifera	chrUn	14	CH_vvi_90	10	22	0.00018422

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V