PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR010987
Description: Glutathione S-transferase, C-terminal-like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	13	CH_atr_43	7	7	0.00000000000000837927
Amborella trichopoda	scaffold00027	13	CH_atr_21	14	28	4.41591e-26
Amborella trichopoda	scaffold00027	14	CH_atr_21	14	28	4.41591e-26
Arabidopsis lyrata	scaffold_2	13	CH_aly_236	4	4	0.000000652808
Beta vulgaris	Bvchr5.sca022	13	CH_bvu_16	9	11	5.21252e-19
Brassica rapa	A07	13	CH_bra_88	5	5	0.0000000032528
Carica papaya	supercontig_114	13	CH_cpa_309	3	3	0.00017448
Citrullus lanatus	Chr5	13	CH_cla_75	6	7	0.00000000000982621
Citrus sinensis	scaffold00109	13	CH_csi_117	5	10	0.000000324337
Citrus sinensis	scaffold00303	13	CH_csi_278	3	3	0.000248309
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_52	7	9	0.0000000000000568274
Cucumis melo	CM3.5_scaffold00006	14	CH_cme_27	10	181	0.000000041558
Eucalyptus grandis	scaffold_4	13	CH_egr_844	4	4	0.00000561373
Fragaria vesca	LG2	13	CH_fve_147	6	10	0.00000000072732
Fragaria vesca	LG3	13	CH_fve_43	9	17	7.05538e-16
Fragaria vesca	LG3	14	CH_fve_31	10	56	0.00000000000191073
Gossypium raimondii	Chr05	13	CH_gra_46	10	13	4.09384e-20
Gossypium raimondii	Chr05	14	CH_gra_40	10	13	4.09384e-20
Populus trichocarpa	Chr11	13	CH_ptr_161	6	6	0.0000000000104622
Populus trichocarpa	Chr11	13	CH_ptr_242	5	5	0.00000000424351
Populus trichocarpa	Chr11	14	CH_ptr_97	12	280	0.000000406506
Ricinus communis	30146	13	CH_rco_375	3	3	0.00040097
Solanum lycopersicum	ch01	13	CH_sly_536	4	7	0.0000627367
Solanum tuberosum	chr01	13	CH_stu_839	4	8	0.000138778
Solanum tuberosum	chr09	13	CH_stu_4	23	23	3.78176e-56
Solanum tuberosum	chr09	14	CH_stu_4	23	23	3.78176e-56
Theobroma cacao	scaffold_2	13	CH_tca_411	4	6	0.000026086
Theobroma cacao	scaffold_4	13	CH_tca_7	20	23	4.63154e-45
Theobroma cacao	scaffold_4	14	CH_tca_7	20	23	4.63154e-45
Vitis vinifera	chr19	13	CH_vvi_44	16	79	1.58902e-20
Vitis vinifera	chr5	13	CH_vvi_385	5	12	0.00000650229
Vitis vinifera	chr19	14	CH_vvi_29	19	86	7.00882e-26
Zea mays	1	13	CH_zma_461	3	3	0.000311713
Zea mays	1	13	CH_zma_12	10	11	2.63997e-22
Zea mays	3	13	CH_zma_138	5	8	0.0000000642913
Zea mays	3	13	CH_zma_46	6	6	0.00000000000217579
Zea mays	9	13	CH_zma_172	4	4	0.000000603579
Zea mays	1	14	CH_zma_10	10	11	2.63997e-22

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V